mRNA_L-elsbetiae_contig14865.3513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14865.3513.1
Unique NamemRNA_L-elsbetiae_contig14865.3513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: D7FKX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-19
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            RDLAQNWDVDIA+SLEDYLEDLE ITITLDGGASKVNFAEAALLIQ  T
Sbjct:  125 RDLAQNWDVDIATSLEDYLEDLEHITITLDGGASKVNFAEAALLIQGST 173
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A6H5KBI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-19
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            RDLAQNWDVDIA+SLEDYLEDLE ITITLDGGASKVNFAEAALLIQ  T
Sbjct:   21 RDLAQNWDVDIATSLEDYLEDLEHITITLDGGASKVNFAEAALLIQGST 69
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: I2CS40_NANGC (Condensin-2 complex subunit h2 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS40_NANGC)

HSP 1 Score: 72.8 bits (177), Expect = 9.200e-16
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            RDLA+NWD+DIASSLEDYL++L+ + I+LDGG + +NFAEAALLIQ CT
Sbjct:    5 RDLARNWDIDIASSLEDYLDELDGMEISLDGGQTNLNFAEAALLIQ-CT 52
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: UPI000711F5B5 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711F5B5)

HSP 1 Score: 70.9 bits (172), Expect = 3.820e-15
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQV 141
            RDLA NW++D+A+ LE+YLEDLE + I+ DGG S +NFAEAAL+IQV
Sbjct:   18 RDLADNWNIDVAAELEEYLEDLESVVISFDGGKSNLNFAEAALMIQV 64
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: UPI0003F0B0A6 (condensin-2 complex subunit H2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B0A6)

HSP 1 Score: 74.3 bits (181), Expect = 2.520e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            RDLAQNW+VD+AS LE+YL +LED+ IT DGGA+ +NFAEAALLIQ  T
Sbjct:   11 RDLAQNWEVDVASRLEEYLTELEDVRITFDGGATTMNFAEAALLIQSST 59
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A0B7A6B1_9EUPU (CNDH2_N domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A6B1_9EUPU)

HSP 1 Score: 69.3 bits (168), Expect = 2.870e-14
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQ 138
            RDLA+NWDVDIA  LE+YLEDLE I IT D GA+ +NF+EAALLIQ
Sbjct:   23 RDLAKNWDVDIAHFLEEYLEDLEKIEITFDDGATTMNFSEAALLIQ 68
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A4D9CZL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.030e-14
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQ 138
            RDLA+NWD+DIASSLEDYL++L+ + I+LDGG + +NFAEAALLIQ
Sbjct:   17 RDLARNWDIDIASSLEDYLDELDGMEISLDGGQTNLNFAEAALLIQ 62
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A836CG43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG43_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.890e-14
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            R+LA NW +DIA+SLEDYLE+LE ITITL+GG S +NFAEAALLIQ  T
Sbjct:   17 RELASNWSIDIATSLEDYLEELEHITITLEGGESNLNFAEAALLIQGST 65
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A1X7SK62_AMPQE (CNDH2_N domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SK62_AMPQE)

HSP 1 Score: 68.2 bits (165), Expect = 9.800e-14
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQ 138
            RDLA+NWDVD+AS LE+YL +LE+ITI  +GG + +NFAEAAL+IQ
Sbjct:   18 RDLAKNWDVDVASELEEYLLELEEITIAFEGGKANLNFAEAALVIQ 63
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BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Match: A0A7S3HGU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGU5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-13
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT 147
            +D+A NWD+DIA SL +YLEDL+++ I++DGG S +NFAEAALLIQ  T
Sbjct:   16 KDIAANWDIDIAESLTEYLEDLDNLRISIDGGKSNLNFAEAALLIQGST 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14865.3513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX7_ECTSI3.800e-1991.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBI6_9PHAE3.800e-1991.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CS40_NANGC9.200e-1671.43Condensin-2 complex subunit h2 (Fragment) n=1 Tax=... [more]
UPI000711F5B53.820e-1565.96hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
UPI0003F0B0A62.520e-1471.43condensin-2 complex subunit H2-like n=1 Tax=Saccog... [more]
A0A0B7A6B1_9EUPU2.870e-1473.91CNDH2_N domain-containing protein (Fragment) n=1 T... [more]
A0A4D9CZL0_9STRA3.030e-1471.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CG43_9STRA3.890e-1473.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X7SK62_AMPQE9.800e-1467.39CNDH2_N domain-containing protein n=2 Tax=Amphimed... [more]
A0A7S3HGU5_9STRA1.130e-1363.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14865contigL-elsbetiae_contig14865:3226..3375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog2880.D7FKX7
Preferred nameNCAPH2
KEGG koko:K11490
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
EggNOG free text desc.chromosome condensation
EggNOG OGsKOG2359@1,KOG2359@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.9018884-CDS-L-elsbetiae_contig14865:3225..33751622815599.9018884-CDS-L-elsbetiae_contig14865:3225..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14865 3226..3375 +
1691682983.2356355-CDS-L-elsbetiae_contig14865:3225..33751691682983.2356355-CDS-L-elsbetiae_contig14865:3225..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14865 3226..3375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14865.3513.1prot_L-elsbetiae_contig14865.3513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14865 3226..3375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14865.3513.1

>prot_L-elsbetiae_contig14865.3513.1 ID=prot_L-elsbetiae_contig14865.3513.1|Name=mRNA_L-elsbetiae_contig14865.3513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
RDLAQNWDVDIASSLEDYLEDLEDITITLDGGASKVNFAEAALLIQVCT*
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mRNA from alignment at L-elsbetiae_contig14865:3226..3375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14865.3513.1 ID=mRNA_L-elsbetiae_contig14865.3513.1|Name=mRNA_L-elsbetiae_contig14865.3513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig14865:3226..3375+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTTGGCCCAGAACTGGGATGTGGATATCGCCAGCAGTCTAGAAGA
CTACCTGGAAGACCTGGAAGACATCACCATAACCTTGGATGGCGGTGCCT
CCAAGGTCAACTTCGCAGAGGCGGCCCTACTGATTCAGGTATGTACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14865:3226..3375+

>mRNA_L-elsbetiae_contig14865.3513.1 ID=mRNA_L-elsbetiae_contig14865.3513.1|Name=mRNA_L-elsbetiae_contig14865.3513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig14865:3226..3375+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTTGGCCCAGAACTGGGATGTGGATATCGCCAGCAGTCTAGAAGA
CTACCTGGAAGACCTGGAAGACATCACCATAACCTTGGATGGCGGTGCCT
CCAAGGTCAACTTCGCAGAGGCGGCCCTACTGATTCAGGTATGTACGTGA
AGGGATTTGGCCCAGAACTGGGATGTGGATATCGCCAGCAGTCTAGAAGA
CTACCTGGAAGACCTGGAAGACATCACCATAACCTTGGATGGCGGTGCCT
CCAAGGTCAACTTCGCAGAGGCGGCCCTACTGATTCAGGTATGTACGTGA
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