mRNA_L-elsbetiae_contig14839.3498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14839.3498.1
Unique NamemRNA_L-elsbetiae_contig14839.3498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14839.3498.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 8.810e-6
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:  118 EKKCAYHRGCAKQPSFGVAGSKKAEFCCEHKKVGMVNV 231
            +K+C  H GC K+PSFG AGSK+AEFCC H K  MV V
Sbjct:    6 DKRCG-HPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIV 42
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BLAST of mRNA_L-elsbetiae_contig14839.3498.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  115 KEKKCAYHRGCAKQPSFGVAGSKKAEFCCEHKKVGMVNVKKYKRC 249
            K ++C    GC  +PS+G+ GSKKAEFC +H K GM NV K KRC
Sbjct:   26 KGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTK-KRC 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14839.3498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW94_9PHAE8.810e-663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY22_ECTSI1.110e-555.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14839contigL-elsbetiae_contig14839:1724..2173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.7980819-UTR-L-elsbetiae_contig14839:1723..18251622815598.7980819-UTR-L-elsbetiae_contig14839:1723..1825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14839 1724..1825 +
1691682982.751806-UTR-L-elsbetiae_contig14839:1723..18251691682982.751806-UTR-L-elsbetiae_contig14839:1723..1825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14839 1724..1825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.8106043-CDS-L-elsbetiae_contig14839:1825..21731622815598.8106043-CDS-L-elsbetiae_contig14839:1825..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14839 1826..2173 +
1691682982.7623007-CDS-L-elsbetiae_contig14839:1825..21731691682982.7623007-CDS-L-elsbetiae_contig14839:1825..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14839 1826..2173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14839.3498.1prot_L-elsbetiae_contig14839.3498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14839 1826..2173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14839.3498.1

>prot_L-elsbetiae_contig14839.3498.1 ID=prot_L-elsbetiae_contig14839.3498.1|Name=mRNA_L-elsbetiae_contig14839.3498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MTPRKEKKCAYHRGCAKQPSFGVAGSKKAEFCCEHKKVGMVNVKKYKRCN
HHDCTKNPRFGFVGSKKADFCSGHKQDGMVDVYTKRCAHHGCIERPRFGL
VGSKKPEFCSGHKQGG
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mRNA from alignment at L-elsbetiae_contig14839:1724..2173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14839.3498.1 ID=mRNA_L-elsbetiae_contig14839.3498.1|Name=mRNA_L-elsbetiae_contig14839.3498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig14839:1724..2173+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGCTGGCTAATGTAAACTACGTCGACTTTTGCATTCGTGTGCGTCG
ATTTGTTTGAGGTTTTCCAAAGAAAAGGCCTGTGATCCGGGAAAACAAGG
TAATGACACCGAGGAAGGAAAAAAAGTGCGCCTATCACCGCGGTTGCGCC
AAGCAGCCGAGCTTTGGTGTGGCCGGCAGCAAAAAGGCGGAATTCTGCTG
TGAGCACAAAAAAGTCGGGATGGTGAATGTCAAGAAGTACAAGAGATGCA
ACCACCACGACTGCACCAAGAATCCGAGGTTTGGTTTTGTCGGCAGCAAA
AAGGCGGATTTCTGCTCTGGGCACAAGCAAGACGGGATGGTGGATGTCTA
CACGAAGAGGTGCGCCCACCACGGCTGCATCGAACGCCCGAGGTTTGGTC
TTGTCGGCAGCAAAAAGCCGGAGTTCTGCTCTGGGCACAAGCAAGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14839:1724..2173+

>mRNA_L-elsbetiae_contig14839.3498.1 ID=mRNA_L-elsbetiae_contig14839.3498.1|Name=mRNA_L-elsbetiae_contig14839.3498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig14839:1724..2173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACACCGAGGAAGGAAAAAAAGTGCGCCTATCACCGCGGTTGCGCCAA
GCAGCCGAGCTTTGGTGTGGCCGGCAGCAAAAAGGCGGAATTCTGCTGTG
AGCACAAAAAAGTCGGGATGGTGAATGTCAAGAAGTACAAGAGATGCAAC
CACCACGACTGCACCAAGAATCCGAGGTTTGGTTTTGTCGGCAGCAAAAA
GGCGGATTTCTGCTCTGGGCACAAGCAAGACGGGATGGTGGATGTCTACA
CGAAGAGGTGCGCCCACCACGGCTGCATCGAACGCCCGAGGTTTGGTCTT
GTCGGCAGCAAAAAGCCGGAGTTCTGCTCTGGGCACAAGCAAGGCGGGAT
GACACCGAGGAAGGAAAAAAAGTGCGCCTATCACCGCGGTTGCGCCAAGC
AGCCGAGCTTTGGTGTGGCCGGCAGCAAAAAGGCGGAATTCTGCTGTGAG
CACAAAAAAGTCGGGATGGTGAATGTCAAGAAGTACAAGAGATGCAACCA
CCACGACTGCACCAAGAATCCGAGGTTTGGTTTTGTCGGCAGCAAAAAGG
CGGATTTCTGCTCTGGGCACAAGCAAGACGGGATGGTGGATGTCTACACG
AAGAGGTGCGCCCACCACGGCTGCATCGAACGCCCGAGGTTTGGTCTTGT
CGGCAGCAAAAAGCCGGAGTTCTGCTCTGGGCACAAGCAAGGCGGG
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