prot_L-elsbetiae_contig14785.3469.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig14785.3469.1
Unique Name	prot_L-elsbetiae_contig14785.3469.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	133

Homology

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BLAST of mRNA_L-elsbetiae_contig14785.3469.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.500e-52
Identity = 84/98 (85.71%), Postives = 93/98 (94.90%), Query Frame = 0

Query:    1 MQVVTCSVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAAFSAMGMLLLYVTIADAVLIRLRPREDVDTVGYWMVVIFGLMMPMALAGPTATLQMVLHK 98
            +QVVT SVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPA FSA+GM LLY+TIADA+LIRLRP+ED+ TVGYWM++IFGLM PMALAGPTATLQM+LHK
Sbjct:   70 LQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHK 167

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14785.3469.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14785.3469.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FXD8_ECTSI	1.500e-52	85.71	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..90
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..34
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..68
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..57
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 91..132
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	TMHMM	TMhelix		coord: 70..92
None	No IPR available	TMHMM	TMhelix		coord: 39..58
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14785	contig	L-elsbetiae_contig14785:2299..3302 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14785.3469.1	mRNA_L-elsbetiae_contig14785.3469.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig14785 320..4268 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig14785.3469.1 ID=prot_L-elsbetiae_contig14785.3469.1|Name=mRNA_L-elsbetiae_contig14785.3469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MQVVTCSVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAAFSAMGMLLLYV
TIADAVLIRLRPREDVDTVGYWMVVIFGLMMPMALAGPTATLQMVLHKLP
WCNKHLHRRRDSQSTAPPGLSTGLTTTARPIA*