mRNA_L-elsbetiae_contig14785.3469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14785.3469.1
Unique NamemRNA_L-elsbetiae_contig14785.3469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14785.3469.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 3.420e-63
Identity = 111/164 (67.68%), Postives = 132/164 (80.49%), Query Frame = 1 
Query:    1 QVDTFLAAVLVFSLIGTEHQQIVRDEDKVQVIMQVVTCSVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAAFSAMGMLLLYVTIADAVLIRLRPREDVDTVGYWMVVIFGLMMPMALAGPTATLQMVLHKLPWCNKHLHRRRDSQSTAPPGLSTGLTTTARPIA 492
            QVDT LA  LV S++G  H+QI +DE+KVQ+++QVVT SVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPA FSA+GM LLY+TIADA+LIRLRP+ED+ TVGYWM++IFGLM PMALAGPTATLQM+LHK           RD+++      S+ L+ T RPIA
Sbjct:   38 QVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKF---------ERDNEAGLDALGSSRLSAT-RPIA 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14785.3469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI3.420e-6367.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14785contigL-elsbetiae_contig14785:320..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000040.1
Exons3
Model size1461
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14785.3469.1prot_L-elsbetiae_contig14785.3469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14785 2299..3302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.781594-UTR-L-elsbetiae_contig14785:319..4091622815595.781594-UTR-L-elsbetiae_contig14785:319..409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 320..409 +
1691682980.748422-UTR-L-elsbetiae_contig14785:319..4091691682980.748422-UTR-L-elsbetiae_contig14785:319..409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 320..409 +
1622815595.7924445-UTR-L-elsbetiae_contig14785:2292..22981622815595.7924445-UTR-L-elsbetiae_contig14785:2292..2298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 2293..2298 +
1691682980.758394-UTR-L-elsbetiae_contig14785:2292..22981691682980.758394-UTR-L-elsbetiae_contig14785:2292..2298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 2293..2298 +
1622815595.8345482-UTR-L-elsbetiae_contig14785:3302..42681622815595.8345482-UTR-L-elsbetiae_contig14785:3302..4268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 3303..4268 +
1691682980.7895904-UTR-L-elsbetiae_contig14785:3302..42681691682980.7895904-UTR-L-elsbetiae_contig14785:3302..4268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14785 3303..4268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.807776-CDS-L-elsbetiae_contig14785:2298..23901622815595.807776-CDS-L-elsbetiae_contig14785:2298..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14785 2299..2390 +
1691682980.7688699-CDS-L-elsbetiae_contig14785:2298..23901691682980.7688699-CDS-L-elsbetiae_contig14785:2298..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14785 2299..2390 +
1622815595.8203487-CDS-L-elsbetiae_contig14785:2995..33021622815595.8203487-CDS-L-elsbetiae_contig14785:2995..3302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14785 2996..3302 +
1691682980.7795513-CDS-L-elsbetiae_contig14785:2995..33021691682980.7795513-CDS-L-elsbetiae_contig14785:2995..3302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14785 2996..3302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14785.3469.1

>prot_L-elsbetiae_contig14785.3469.1 ID=prot_L-elsbetiae_contig14785.3469.1|Name=mRNA_L-elsbetiae_contig14785.3469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MQVVTCSVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAAFSAMGMLLLYV
TIADAVLIRLRPREDVDTVGYWMVVIFGLMMPMALAGPTATLQMVLHKLP
WCNKHLHRRRDSQSTAPPGLSTGLTTTARPIA*
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mRNA from alignment at L-elsbetiae_contig14785:320..4268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14785.3469.1 ID=mRNA_L-elsbetiae_contig14785.3469.1|Name=mRNA_L-elsbetiae_contig14785.3469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3949bp|location=Sequence derived from alignment at L-elsbetiae_contig14785:320..4268+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAGACACCTTTCTGGCAGCAGTTCTCGTCTTCTCGCTCATAGGAAC
CGAGCACCAGCAGATCGTCAGAGACGAGGATAAGGTCCAGGTGAGCACAC
CCAGCCACAACCCAGATGATGTGCGTGGTGCGCATACATATGCATTGCCT
CGATTCAACCCGGTTCCTCGCTGCTACGTATGTACTCCTATGCTTCTACT
TCTTTTTTTTCCCTCCCATTATTGGCTTATTCGTCGTCGTGTGTGCCGTG
TGGGCCGTGTGTGTGTGTGTGTGTGTGTGATATACTTCGATAAGTGTGTA
TGTGTTTTTTTATTTTTCTTCTTCACACATTTATTTCCAGTGCTCGATGG
GCTCCCTGTCACGAGGACATCTTGCCAGAGAATACTGAACCGTGGTCACA
CAGAAGGGCTCCTTTTCCCCGAGGCCCCCACTCCCCCCGTCTGCGGTGCT
TGCCTAAGATTTTTGTCGCGAGAAGGGTTCAGCCGTTTCTCTCCCTCGTC
GACGGTGAGGTCGTGTGTGTTTTGTTTTTCATGTATGCACGCTGGAACCG
CTGCCGGGGACAAAACGGCTCGGCAGGTGGGTAGGTAGATGAAGGCAGGT
ACGTGGCCCCCTTTTAAAACCCTTCTAGCACGAAAGGGCCCTGAAAAAAA
CAATTGTCTGAGAAAAAATATAGCACCAATCTGTGTGTGCCCACTGATTG
GTCGAGGAAGACAGCCGTTCCTGCGCAAGACCCTGCAAAAAACAGCTGCA
GGGCCGCACTGAATTTGGCGCCACTTTGTTATGCTGGATGAAAATGCAGA
AGGTTCAGGGACACTTCTCATACTCAAAACCCCAAGTCAAGCTTTTTTGG
CCTACCAGATATTGCGGAAGCTCTTTGTCTCCGAGACATGAGGTGAACCC
TGGGCTGTACACACGCAGCGGCCCTCACAGTGCACAAAACAGTGTGGCGA
GCGAAGCAACCCGCTCTAAACTCAGCAGACGGTGGTTCTCGAGAGAGACA
GCGAAGCGGCGTGTGTTCGGTGTCAGCCCAAACCCCAAACGGATCATATC
GCTGGGGGCGCCGCAGATAGTATACAATTGAAATCGCGGACGCAACAAAA
TTTTGAGATTTTTGGTGATATCGACGACAACTTCGTTGTGCCTCCCCAGC
ACTGCTGTGAAGCTGTGAGGAGGCCGGATAGGGTAGGCAAAGTGTCCATA
CATCTCGGCAGGGTACTCCCTGGCCTTTTACACGGGGTTCTACATAAGAC
CGCCTGTGGACCCCGAAGTAATAAAACAGAGGCCAACGTTAGGTGTCGCC
AAATCGTCGCCGAACGGGCTTCTAGTATATACTACAAACTACAATACCCG
AGGGTTAATTACAGTAACCCGCTTGAAGTACAATACCAGGGTTAATTATC
GCAATCCGCTTGAAGTTCCCCCCCCGGGAGGGAGATATTTGTGTTTGTAC
ATATTGTTTCGTTTTTGTTAAAAAATATGTATATATATGTGAAAAAAACA
ATCCCCCCCGGAAGAAAACTCAGGGAAATTATGCTCCCAGGCCGAAAAGG
TGATGGAGGGGGGTAACTCAAAACACCCCGAGGGGAACTTAGAGCGGATC
GGTAGTAGTATGTACCGAGCATGGGCGAATATAGCCACCCTGTGCTGTGT
ATATATGTAGATGGGCGACCGATCCTGACATCACCGGAGCTTCCTACACG
GTGGTTCGCTCGCCGAAATCACGGTCGCTTTTCCACAAGCGCCCATGCCC
GCCCCTGCTGTCGGCGTAACTCGTAGCATTGACGTTGCGTGTCAGTTCGA
CGGTCTATTGGGTATTCTGACTTTGGGTCGGCCCTGTGCTTGCTTCCCGA
GAGCTCTCTCTCTCTCTCTCTCTCTCGTTGTCCTGCTCGATAATATATGG
CGTGAACATCAATCCATTGACCAGCTGTTCGTTACCCTCGCGCTGTGCTG
CCGGCGGGTTGCTGCCCTTACAGGTGATCATGCAGGTGGTCACCTGCTCG
GTGTTTTTGGCCGCGATCGCTCACACCGTCGTGCTCATGGTGTGCACCGG
TTGGCGCTACACCTTGGCATGGTGAGTGTGAGCATAGTACTCGGGGTTTG
AATCTTTATCTAGCGGGAGTCAGCGGCGATAACGTCCACCACTCGAGACG
GGCTGAATTATTTGTTTCGTTGCGATGCGGTGAGGAATAAATGCCAAGGG
TAATCATGATCGAGCGCACGCCGTAAGACCAGGTTGCGAGAGTTGAGCGG
GCGGGATCCTCTTAGGCCCGGCTTTCCCATCCCAAGATCCAACCGAAGTT
CGCAGCAACGGAAGATCACTCGTGTAAAGATTCCCGAACATGGAGGCTGA
TCTGACATGATAACATCTCTGGCTCTTGCGTAGGTAATTTAGGCATGTTT
TTGTTTTTTTGCTTCTTCGCATTTATTGCCAGCTCCTTGCCACGAGGGCG
CCTTGCCAGAGTACTAAAGAACCGTGGTCACACCCAGAAGGGTTGTTGTT
TTTTGTTCCTTCACTTTAAATTGCCCGTATAATCGAGATTGCTAATTCCA
AAGATCTAGCGCAACTCACGGCCCGTGATCACAAAAGTGTGTGTGTGTGT
GTGTATTTGCATAATGATGCCGCAACCTGGCGTATATTTACTGTGTATGC
ACAAACAATGATGCCACAACACACAGGTACGACCCCTTGTTTCCGGCGGC
CTTCTCGGCGATGGGGATGCTCCTCCTCTACGTGACGATAGCCGACGCGG
TCCTGATCCGGCTGCGGCCCAGGGAAGACGTCGACACGGTTGGGTACTGG
ATGGTGGTCATCTTCGGCCTCATGATGCCCATGGCCCTCGCGGGGCCTAC
CGCGACCCTGCAGATGGTTCTGCACAAGTTGCCCTGGTGCAACAAGCACC
TGCACCGCCGGCGGGACTCTCAGAGTACTGCGCCGCCCGGGTTGTCGACG
GGGTTGACAACGACAGCGCGTCCCATTGCGTAATAGCTGGCGAGGAGGCG
TGGGGCGGGGGGAGTCACCAGTTCTATGTACGATGCCAGGAAGCCCCCAC
GAAATAGAGCCTGCGCGGCCCCCGTTTGCGGGCGATGGCGGCGATGATGG
CCCAGCAGCAGCACGATTGCTTCTCCTATCCACCCGACGCCCTCACGCAC
TCTTCTTACCGATGTTGCGCGCTTTGTAGAGAAGACGGCGGGTGCTGGTT
GCCCAAGGGCGGGCGATTCGCTTTTTTGTTATTCTGCTTGAGGGAGCATC
ATATCGCCGTTACAACAAGGTGCTTTCAGCTGCTCCTCTTGTATGCGTCC
TCTGTCTGTAGCTCTTTTAGTTTACTGCATCCCGCCAACAGGGCGTTGTG
TTTGTCGGCGATATACTGTTAAGGGAACGTACACACCGTGCGCTGTAGGG
TGTGGGGCATGCGTACTATAAATAACCAATCATCAGAAGTTTCAGACGTA
CATATGTTGTATGTATGAAGTTTTGCTCATTCACGTCGTTGATGTTTCGG
TCTTCATGTGTTCATTTTTTTCTTGATTTTTATTTTTTTCTTCTTACGGA
CACCCACGCATTTACCAATGCTTGGACGAGGATCCGAGCAAATTTAGAAA
CGAAGCACCATCTCTTTCTTGTCGCCGCGTATGTAGTTAGACACGTGGTA
CGTTATTTTAATTTACCAGAGAGAGTGCTGTTTGTTTCGATTCTTGGACA
GGTAGAGGCAGCAGGGAGTTTTGTTTTTAATTGGTGATTTTGTCCTGGCT
GTGCCACCTGGAGGTGGTCACGCGTGTGTTGGTAGTGTTTTGTTGCGCGT
GAGCTGTCCCGATTTTAGGCATTTCGTATCTATGTATGCTATTTCTGACG
ATAAAAAGCGCCAAGTGTGAAAAAAAAATGATGCTTATTTATTTCAAGGG
TCTCCCAGGAGAAACATTCAGGACACGTAGGCCCCAATATCGAAATTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14785:320..4268+

>mRNA_L-elsbetiae_contig14785.3469.1 ID=mRNA_L-elsbetiae_contig14785.3469.1|Name=mRNA_L-elsbetiae_contig14785.3469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig14785:320..4268+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTGGTCACCTGCTCGGTGTTTTTGGCCGCGATCGCTCACACCGT
CGTGCTCATGGTGTGCACCGGTTGGCGCTACACCTTGGCATGATGCAGGT
GGTCACCTGCTCGGTGTTTTTGGCCGCGATCGCTCACACCGTCGTGCTCA
TGGTGTGCACCGGTTGGCGCTACACCTTGGCATGGTACGACCCCTTGTTT
CCGGCGGCCTTCTCGGCGATGGGGATGCTCCTCCTCTACGTGACGATAGC
CGACGCGGTCCTGATCCGGCTGCGGCCCAGGGAAGACGTCGACACGGTTG
GGTACTGGATGGTGGTCATCTTCGGCCTCATGATGCCCATGGCCCTCGCG
GGGCCTACCGCGACCCTGCAGATGGTTCTGCACAAGTTGCCCTGGTGCAA
CAAGCACCTGCACCGCCGGCGGGACTCTCAGAGTACTGCGCCGCCCGGGT
TGTCGACGGGGTTGACAACGACAGCGCGTCCCATTGCGTAAGTACGACCC
CTTGTTTCCGGCGGCCTTCTCGGCGATGGGGATGCTCCTCCTCTACGTGA
CGATAGCCGACGCGGTCCTGATCCGGCTGCGGCCCAGGGAAGACGTCGAC
ACGGTTGGGTACTGGATGGTGGTCATCTTCGGCCTCATGATGCCCATGGC
CCTCGCGGGGCCTACCGCGACCCTGCAGATGGTTCTGCACAAGTTGCCCT
GGTGCAACAAGCACCTGCACCGCCGGCGGGACTCTCAGAGTACTGCGCCG
CCCGGGTTGTCGACGGGGTTGACAACGACAGCGCGTCCCATTGCGTAA
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