mRNA_L-elsbetiae_contig1451.3312.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1451.3312.1
Unique NamemRNA_L-elsbetiae_contig1451.3312.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1451.3312.1 vs. uniprot
Match: D7FQL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.950e-45
Identity = 128/291 (43.99%), Postives = 167/291 (57.39%), Query Frame = 3 
Query:  309 EDNGTSDEDLPDADRQQRSPSSSAVDMKSVAATADTHQHHQEREDTITSLAGGYYAKPRK---QQVAH---GSDGEAAI-------NYQNKRMARKITQLEANLAASEGRISHLISSSAGAAENASRLRRETETIAATKEAYAXXXXXXXXXXXXXXXRASWLQGELEVVWACGIQRVAELEYDLELARRQQIVTRAEESLSTANGSVENESTTEQGSTDTSGRSSLSDESTQNGNPRHGLV--LETRDGLDKMMSDTHKALSCLRKKFHRAMGENEELQARCNHFEGNLV 1136
            +D+ T+ ED  + DR+Q    S  V  K++A T+  HQ +Q   +     AGGYYA+P+K   Q +AH   GS+  AA+         +  RMA KITQLEA L AS+GR++ L+SSSA AAENASR RRE E     + A+                RASWL GEL+VVWACGIQRV ELEY+LE+ RRQQ         ST  G  E +S TE GS    G +       ++ +P H  V  +E  +GLDKMM DT +ALS LR KF+RA+GE  +L+ RC+  E  L+
Sbjct:   74 DDDQTTGEDRGEYDREQIPWQSFVVARKTLATTSLVHQQNQAEPEGADIHAGGYYARPKKGPPQSIAHRDAGSNVAAAVFTASVRQQQEKARMATKITQLEAALVASQGRVAQLVSSSAIAAENASRRRREKEAAIDKERAFHRRVSQLEDALAQAEKRASWLHGELKVVWACGIQRVNELEYELEVTRRQQA------HASTGYGPEETDSATENGSAAPFGGNF------RDASPHHEAVEPVEYGNGLDKMMDDTKQALSDLRTKFYRAIGERNDLKVRCDLLEQQLL 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1451.3312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQL7_ECTSI4.950e-4543.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1451contigL-elsbetiae_contig1451:11224..13745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009210.1
Exons4
Model size1565
Cds size1338
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1451.3312.1prot_L-elsbetiae_contig1451.3312.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1451 11863..13622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3242972-UTR-L-elsbetiae_contig1451:11223..112821622815582.3242972-UTR-L-elsbetiae_contig1451:11223..11282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 11224..11282 +
1691682972.9872184-UTR-L-elsbetiae_contig1451:11223..112821691682972.9872184-UTR-L-elsbetiae_contig1451:11223..11282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 11224..11282 +
1622815582.3384454-UTR-L-elsbetiae_contig1451:11817..118621622815582.3384454-UTR-L-elsbetiae_contig1451:11817..11862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 11818..11862 +
1691682972.9990516-UTR-L-elsbetiae_contig1451:11817..118621691682972.9990516-UTR-L-elsbetiae_contig1451:11817..11862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 11818..11862 +
1622815582.3905804-UTR-L-elsbetiae_contig1451:13622..137451622815582.3905804-UTR-L-elsbetiae_contig1451:13622..13745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 13623..13745 +
1691682973.0435505-UTR-L-elsbetiae_contig1451:13622..137451691682973.0435505-UTR-L-elsbetiae_contig1451:13622..13745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1451 13623..13745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3516378-CDS-L-elsbetiae_contig1451:11862..127801622815582.3516378-CDS-L-elsbetiae_contig1451:11862..12780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 11863..12780 +
1691682973.0114875-CDS-L-elsbetiae_contig1451:11862..127801691682973.0114875-CDS-L-elsbetiae_contig1451:11862..12780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 11863..12780 +
1622815582.3648646-CDS-L-elsbetiae_contig1451:13088..133341622815582.3648646-CDS-L-elsbetiae_contig1451:13088..13334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 13089..13334 +
1691682973.0223649-CDS-L-elsbetiae_contig1451:13088..133341691682973.0223649-CDS-L-elsbetiae_contig1451:13088..13334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 13089..13334 +
1622815582.377992-CDS-L-elsbetiae_contig1451:13448..136221622815582.377992-CDS-L-elsbetiae_contig1451:13448..13622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 13449..13622 +
1691682973.0330222-CDS-L-elsbetiae_contig1451:13448..136221691682973.0330222-CDS-L-elsbetiae_contig1451:13448..13622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 13449..13622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1451.3312.1

>prot_L-elsbetiae_contig1451.3312.1 ID=prot_L-elsbetiae_contig1451.3312.1|Name=mRNA_L-elsbetiae_contig1451.3312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=446bp
MSWVRSRIADLEASSGTSIGRTIVAPPCSSPAASARSTIPTVCQRERPEQ
VQPSIESVPQLSGTSSADEDNGTSDEDLPDADRQQRSPSSSAVDMKSVAA
TADTHQHHQEREDTITSLAGGYYAKPRKQQVAHGSDGEAAINYQNKRMAR
KITQLEANLAASEGRISHLISSSAGAAENASRLRRETETIAATKEAYARR
IYQLEGTLAQAEKRASWLQGELEVVWACGIQRVAELEYDLELARRQQIVT
RAEESLSTANGSVENESTTEQGSTDTSGRSSLSDESTQNGNPRHGLVLET
RDGLDKMMSDTHKALSCLRKKFHRAMGENEELQARCNHFEGNLVGNTSGS
TVAATSSESSNQRSALRGHQQRTSETSETTKPSSDRNRSRSNSSSASSSA
SSSASSSATVAVQPAPVTTVGGRSPSWCWSPPASTGPRVSARDDE*
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mRNA from alignment at L-elsbetiae_contig1451:11224..13745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1451.3312.1 ID=mRNA_L-elsbetiae_contig1451.3312.1|Name=mRNA_L-elsbetiae_contig1451.3312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2522bp|location=Sequence derived from alignment at L-elsbetiae_contig1451:11224..13745+ (Laminarionema elsbetiae ELsaHSoW15)
CACTGCTGTCTCTGCTGTCAGCAGCGTCGGTGCGTGCAGGCAATCGTTGG
ATTGAAAAGGTACGATGACATGGCATGTTTGACTAACGAGTGCTGTCCCG
CGTCACACAGCGTTGTAATGTAGATACATGTCAATACGCGTCGACGTTGA
TCGGATCCGCCTGTCTTTTCCTCAGCCTGTTTGAGCAAGTTGATTTCCGT
TTTACACATGCAGCAGACGACGTGTGGGGTGTGTGATTTTGTGAGACAAC
GGCCACGGTAGGTAGAGAGGTGAGTAGCTACACGCGAAGAGGCTTCTAGA
GCAAAGGATGCCATCGTGCCAAGGTGCGGGGCAAAGCTACGTCCTTCACA
GCTCTCCTCACGCAGCTGCACCATGAGACTGATCACGCGGCGGAGATGGA
TAGGCTATCTATGTAGATATGTCTCCGACTCAAGATGCTGCACACGTGTA
GTCGTATCGTGTCTGACGCGCAAGTGCTACCATGGCATAGTACTAGCGCC
CAGTACATAGACTAGTACCAGAAGTACCAGCAGCAGCTACTCCAACCACG
CTAACTTTTTGAGTATCCGGCTGCCTCGCACGAACGCATGGCAGGCTGAA
AACACGAACGAGCGAGGTTGTGAAACGTCAACAGCAAAAATGAGCTGGGT
GAGGAGTCGAATCGCTGATCTCGAAGCCAGCAGCGGCACTTCAATCGGCC
GAACGATAGTTGCGCCGCCGTGTTCATCACCGGCGGCGTCCGCTCGAAGC
ACCATCCCCACCGTCTGCCAACGAGAGCGTCCCGAGCAGGTCCAACCCTC
CATCGAGAGTGTCCCTCAACTCTCTGGCACATCCAGCGCCGACGAAGACA
ACGGGACCTCCGATGAAGACCTTCCAGATGCCGACAGACAGCAGAGGTCG
CCGTCATCGTCTGCGGTAGATATGAAGTCTGTCGCTGCCACCGCCGACAC
CCATCAGCATCACCAAGAACGAGAGGATACTATCACCAGTCTCGCTGGCG
GATACTACGCAAAACCCAGGAAGCAGCAGGTCGCCCATGGTAGCGACGGC
GAAGCTGCCATCAACTACCAGAACAAAAGGATGGCAAGAAAGATCACCCA
GCTCGAAGCCAACCTGGCGGCTTCCGAAGGCCGTATCTCACACCTCATAT
CTTCCTCCGCCGGAGCGGCCGAGAATGCGTCCCGCCTTCGTCGAGAAACC
GAGACCATCGCCGCAACAAAGGAGGCCTACGCTCGTCGGATCTATCAGCT
CGAGGGCACGCTTGCACAAGCGGAAAAGCGCGCGAGCTGGCTGCAGGGGG
AACTAGAAGTCGTCTGGGCCTGCGGCATCCAGCGTGTTGCCGAGCTAGAA
TACGACCTTGAGCTTGCCCGGCGGCAGCAAATAGTGACGAGGGCGGAAGA
GAGCCTGTCCACTGCAAATGGGTCTGTCGAGAACGAATCTACAACTGAGC
AAGGTTCTACCGATACTTCTGGTAGAAGCAGCCTGTCTGACGAGAGTACT
CAGAATGGAAACCCACGTCATGGGTTGGTGTTAGAAACCCGGGACGGGCT
AGATAAGGTGGGTGGAGGTTCATCATGCCCCTGTGTGTTCTTCACAATCC
TGTGGTGTGTCGCATCTATCTTATTCTTTTGTTGCAGCTAAATCGTTGAA
CATGCCACCTATAGAGAGAAATATAGACTAAAGCACTCGCGCAGATGGGG
TTACATAGTTCATAAAGCTTTGGATGATTTTCATAAACACGATGTGAGTT
TCTAACGATTGAACCACCAACCCGGCCGGTGTGTGCATACCAATGACCCT
CTCGCTCCCTCTACATCTCCTGCGCCGACGTTCGTGTGACCGTTCGATCG
CACGACTGCGTACAGATGATGAGCGACACGCACAAGGCCCTCTCGTGCCT
ACGCAAAAAGTTCCACCGAGCGATGGGCGAAAACGAAGAGCTGCAGGCCA
GGTGCAACCACTTCGAAGGAAATCTGGTGGGAAACACTAGCGGCTCGACC
GTCGCCGCCACCTCGAGCGAAAGCAGCAACCAACGGAGCGCTCTACGCGG
TCACCAGCAGAGGACGAGCGAGACGAGCGAGACCACGAAGCCCAGCAGTG
ACAGAAACCGGGTGACTAAAAAAGAGAAGATCAACCGCGGCAAAGGTGGC
GCTAGCCGTAACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAG
GAGCAGGAGGAGCAGCAGGAGCGAGAGCAGAAGCAACAGCAGCAGTGCTA
GCAGCAGCGCTAGCAGCAGCGCTAGCAGCAGCGCAACGGTGGCGGTGCAG
CCTGCGCCGGTGACCACGGTCGGCGGTAGATCCCCCTCGTGGTGTTGGTC
GCCACCCGCTAGCACAGGGCCCCGCGTTTCGGCCCGGGACGACGAATAAC
AGAGACACAATCATCGTCGTCACGCCAGCGCTCTCAACCTGCTGAGGCTT
CCGAGAGGTGTTTCCTACTGCGAGATGCGACGCGGCGTGGAGGTTGCGGG
TGCCGTTTCAAGATCTAGACTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1451:11224..13745+

>mRNA_L-elsbetiae_contig1451.3312.1 ID=mRNA_L-elsbetiae_contig1451.3312.1|Name=mRNA_L-elsbetiae_contig1451.3312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig1451:11224..13745+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTGGGTGAGGAGTCGAATCGCTGATCTCGAAGCCAGCAGCGGCAC
TTCAATCGGCCGAACGATAGTTGCGCCGCCGTGTTCATCACCGGCGGCGT
CCGCTCGAAGCACCATCCCCACCGTCTGCCAACGAGAGCGTCCCGAGCAG
GTCCAACCCTCCATCGAGAGTGTCCCTCAACTCTCTGGCACATCCAGCGC
CGACGAAGACAACGGGACCTCCGATGAAGACCTTCCAGATGCCGACAGAC
AGCAGAGGTCGCCGTCATCGTCTGCGGTAGATATGAAGTCTGTCGCTGCC
ACCGCCGACACCCATCAGCATCACCAAGAACGAGAGGATACTATCACCAG
TCTCGCTGGCGGATACTACGCAAAACCCAGGAAGCAGCAGGTCGCCCATG
GTAGCGACGGCGAAGCTGCCATCAACTACCAGAACAAAAGGATGGCAAGA
AAGATCACCCAGCTCGAAGCCAACCTGGCGGCTTCCGAAGGCCGTATCTC
ACACCTCATATCTTCCTCCGCCGGAGCGGCCGAGAATGCGTCCCGCCTTC
GTCGAGAAACCGAGACCATCGCCGCAACAAAGGAGGCCTACGCTCGTCGG
ATCTATCAGCTCGAGGGCACGCTTGCACAAGCGGAAAAGCGCGCGAGCTG
GCTGCAGGGGGAACTAGAAGTCGTCTGGGCCTGCGGCATCCAGCGTGTTG
CCGAGCTAGAATACGACCTTGAGCTTGCCCGGCGGCAGCAAATAGTGACG
AGGGCGGAAGAGAGCCTGTCCACTGCAAATGGGTCTGTCGAGAACGAATC
TACAACTGAGCAAGGTTCTACCGATACTTCTGGTAGAAGCAGCCTGTCTG
ACGAGAGTACTCAGAATGGAAACCCACGTCATGGGTTGGTGTTAGAAACC
CGGGACGGGCTAGATAAGATGAGCTGGGTGAGGAGTCGAATCGCTGATCT
CGAAGCCAGCAGCGGCACTTCAATCGGCCGAACGATAGTTGCGCCGCCGT
GTTCATCACCGGCGGCGTCCGCTCGAAGCACCATCCCCACCGTCTGCCAA
CGAGAGCGTCCCGAGCAGGTCCAACCCTCCATCGAGAGTGTCCCTCAACT
CTCTGGCACATCCAGCGCCGACGAAGACAACGGGACCTCCGATGAAGACC
TTCCAGATGCCGACAGACAGCAGAGGTCGCCGTCATCGTCTGCGGTAGAT
ATGAAGTCTGTCGCTGCCACCGCCGACACCCATCAGCATCACCAAGAACG
AGAGGATACTATCACCAGTCTCGCTGGCGGATACTACGCAAAACCCAGGA
AGCAGCAGGTCGCCCATGGTAGCGACGGCGAAGCTGCCATCAACTACCAG
AACAAAAGGATGGCAAGAAAGATCACCCAGCTCGAAGCCAACCTGGCGGC
TTCCGAAGGCCGTATCTCACACCTCATATCTTCCTCCGCCGGAGCGGCCG
AGAATGCGTCCCGCCTTCGTCGAGAAACCGAGACCATCGCCGCAACAAAG
GAGGCCTACGCTCGTCGGATCTATCAGCTCGAGGGCACGCTTGCACAAGC
GGAAAAGCGCGCGAGCTGGCTGCAGGGGGAACTAGAAGTCGTCTGGGCCT
GCGGCATCCAGCGTGTTGCCGAGCTAGAATACGACCTTGAGCTTGCCCGG
CGGCAGCAAATAGTGACGAGGGCGGAAGAGAGCCTGTCCACTGCAAATGG
GTCTGTCGAGAACGAATCTACAACTGAGCAAGGTTCTACCGATACTTCTG
GTAGAAGCAGCCTGTCTGACGAGAGTACTCAGAATGGAAACCCACGTCAT
GGGTTGGTGTTAGAAACCCGGGACGGGCTAGATAAGATGATGAGCGACAC
GCACAAGGCCCTCTCGTGCCTACGCAAAAAGTTCCACCGAGCGATGGGCG
AAAACGAAGAGCTGCAGGCCAGGTGCAACCACTTCGAAGGAAATCTGGTG
GGAAACACTAGCGGCTCGACCGTCGCCGCCACCTCGAGCGAAAGCAGCAA
CCAACGGAGCGCTCTACGCGGTCACCAGCAGAGGACGAGCGAGACGAGCG
AGACCACGAAGCCCAGCAGTGACAGAAACCGGATGATGAGCGACACGCAC
AAGGCCCTCTCGTGCCTACGCAAAAAGTTCCACCGAGCGATGGGCGAAAA
CGAAGAGCTGCAGGCCAGGTGCAACCACTTCGAAGGAAATCTGGTGGGAA
ACACTAGCGGCTCGACCGTCGCCGCCACCTCGAGCGAAAGCAGCAACCAA
CGGAGCGCTCTACGCGGTCACCAGCAGAGGACGAGCGAGACGAGCGAGAC
CACGAAGCCCAGCAGTGACAGAAACCGGAGCAGAAGCAACAGCAGCAGTG
CTAGCAGCAGCGCTAGCAGCAGCGCTAGCAGCAGCGCAACGGTGGCGGTG
CAGCCTGCGCCGGTGACCACGGTCGGCGGTAGATCCCCCTCGTGGTGTTG
GTCGCCACCCGCTAGCACAGGGCCCCGCGTTTCGGCCCGGGACGACGAAT
AAAGCAGAAGCAACAGCAGCAGTGCTAGCAGCAGCGCTAGCAGCAGCGCT
AGCAGCAGCGCAACGGTGGCGGTGCAGCCTGCGCCGGTGACCACGGTCGG
CGGTAGATCCCCCTCGTGGTGTTGGTCGCCACCCGCTAGCACAGGGCCCC
GCGTTTCGGCCCGGGACGACGAATAA
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