mRNA_L-elsbetiae_contig14480.3294.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14480.3294.1
Unique NamemRNA_L-elsbetiae_contig14480.3294.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.970e-37
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            RMSEFQV+SRELFKMPER  APNGCLDPRLGVSDK+AVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK
Sbjct:   75 RMSEFQVWSRELFKMPERIAAPNGCLDPRLGVSDKTAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 143
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.970e-37
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            RMSEFQV+SRELFKMPER  APNGCLDPRLGVSDK+AVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK
Sbjct:   77 RMSEFQVWSRELFKMPERIAAPNGCLDPRLGVSDKTAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 145
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S1U7N1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7N1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.370e-32
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R+SE  V SR+LF MP+R PAPNGCLDPRLGVSDK +VCETC K LVDC GH+G+I+L LPVFH+GYFK
Sbjct:   36 RLSELHVCSRDLFTMPQRLPAPNGCLDPRLGVSDKMSVCETCGKKLVDCPGHFGYIRLNLPVFHVGYFK 104
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: K0SYH6_THAOC (DNA-directed RNA polymerase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYH6_THAOC)

HSP 1 Score: 110 bits (276), Expect = 5.480e-30
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R++EFQV SR+LF MP+R+PAPNG LDPRLGVSDK + C TC   L DCAGH+G+IKL LP FHIGYFK
Sbjct:   51 RLAEFQVTSRDLFTMPQRSPAPNGVLDPRLGVSDKVSTCATCKLKLADCAGHFGYIKLALPCFHIGYFK 119
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S3XKM9_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM9_HETAK)

HSP 1 Score: 110 bits (274), Expect = 1.800e-29
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R+SEF+V +R LF+MP R PAP G LDPRLGVSDK +VC+TC + L DCAGHYG+I+LELPVFHIGYF 
Sbjct:   38 RLSEFEVCNRSLFQMPTRNPAPYGVLDPRLGVSDKVSVCQTCRRKLNDCAGHYGNIRLELPVFHIGYFN 106
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A6U0UMH2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UMH2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.480e-29
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            RMSE  V SR+LF MP+R PAP GCLDPRLGVSDK ++CETC+K LVDC GH+G+IKL LPVFH+GYFK
Sbjct:   30 RMSELHVCSRDLFTMPQRQPAPRGCLDPRLGVSDKMSICETCNKKLVDCPGHFGYIKLHLPVFHVGYFK 98
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S3DWI7_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWI7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.880e-29
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R++EFQV SRELF MP RTPA  GCLDPRLGVSDK + C TC K L DCAGH+G IKL LPVFHIG+ +
Sbjct:   55 RLAEFQVTSRELFSMPSRTPAHGGCLDPRLGVSDKVSTCTTCKKKLTDCAGHFGFIKLALPVFHIGFMR 123
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A1Z5JM39_FISSO (DNA-directed RNA polymerase subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JM39_FISSO)

HSP 1 Score: 117 bits (292), Expect = 6.310e-29
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R++EFQV SR+LF+MP RTPAP GCLDPRLGVSDK + C TC K LVDCAGH+G+IKL LPVFHIG+F+
Sbjct:   43 RLAEFQVSSRDLFRMPSRTPAPGGCLDPRLGVSDKLSSCATCKKKLVDCAGHFGYIKLALPVFHIGFFR 111
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A1E7FAF7_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAF7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.410e-27
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R++EFQV SRELF MP R PAP GCLDPRLGVSDK + C TC + LVDCAGH+G+I+L LPVFHIGY +
Sbjct:   43 RLAEFQVTSRELFSMPSRNPAPGGCLDPRLGVSDKISTCATCKRKLVDCAGHFGYIRLALPVFHIGYIR 111
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BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A448Z7A2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7A2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.640e-27
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 RMSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 207
            R++EFQV SRELF MP R PAP GCLDPRLGVSDK + C TC K L DCAGH+G+I+L LPVFHIGY +
Sbjct:   50 RLAEFQVTSRELFSMPSRNPAPGGCLDPRLGVSDKVSTCHTCKKKLQDCAGHFGYIRLALPVFHIGYLR 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI81_9PHAE1.970e-3794.20DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FU80_ECTSI1.970e-3794.20DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S1U7N1_9STRA2.370e-3273.91DNA-directed RNA polymerase (Fragment) n=1 Tax=Pha... [more]
K0SYH6_THAOC5.480e-3071.01DNA-directed RNA polymerase (Fragment) n=1 Tax=Tha... [more]
A0A7S3XKM9_HETAK1.800e-2971.01DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A6U0UMH2_9STRA2.480e-2973.91DNA-directed RNA polymerase subunit n=1 Tax=Pingui... [more]
A0A7S3DWI7_9STRA5.880e-2971.01DNA-directed RNA polymerase (Fragment) n=2 Tax=Amp... [more]
A0A1Z5JM39_FISSO6.310e-2973.91DNA-directed RNA polymerase subunit n=2 Tax=Fistul... [more]
A0A1E7FAF7_9STRA1.410e-2771.01DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z7A2_9STRA2.640e-2771.01DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14480contigL-elsbetiae_contig14480:2825..3809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue6.1e-31
Seed eggNOG ortholog2880.D7FU80
Preferred namePOLR3A
KEGG rclassRC02795
KEGG koko:K03018,ko:K21594
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000731,GO:0001817,GO:0001819,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035770,GO:0036464,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045087,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051239,GO:0051240,GO:0051716,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0261@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03029
Exons2
Model size207
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14480.3294.1prot_L-elsbetiae_contig14480.3294.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14480 2828..3809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.633116-UTR-L-elsbetiae_contig14480:2824..28271622815580.633116-UTR-L-elsbetiae_contig14480:2824..2827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14480 2825..2827 +
1691682971.879746-UTR-L-elsbetiae_contig14480:2824..28271691682971.879746-UTR-L-elsbetiae_contig14480:2824..2827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14480 2825..2827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.6503642-CDS-L-elsbetiae_contig14480:2827..29521622815580.6503642-CDS-L-elsbetiae_contig14480:2827..2952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14480 2828..2952 +
1691682971.891816-CDS-L-elsbetiae_contig14480:2827..29521691682971.891816-CDS-L-elsbetiae_contig14480:2827..2952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14480 2828..2952 +
1622815580.6732144-CDS-L-elsbetiae_contig14480:3730..38091622815580.6732144-CDS-L-elsbetiae_contig14480:3730..3809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14480 3731..3809 +
1691682971.9005227-CDS-L-elsbetiae_contig14480:3730..38091691682971.9005227-CDS-L-elsbetiae_contig14480:3730..3809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14480 3731..3809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14480.3294.1

>prot_L-elsbetiae_contig14480.3294.1 ID=prot_L-elsbetiae_contig14480.3294.1|Name=mRNA_L-elsbetiae_contig14480.3294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAG
HYGHIKLELPVFHIGYFK
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mRNA from alignment at L-elsbetiae_contig14480:2825..3809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14480.3294.1 ID=mRNA_L-elsbetiae_contig14480.3294.1|Name=mRNA_L-elsbetiae_contig14480.3294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=985bp|location=Sequence derived from alignment at L-elsbetiae_contig14480:2825..3809+ (Laminarionema elsbetiae ELsaHSoW15)
CGCATGAGCGAGTTCCAGGTTTTTTCGCGCGAGCTGTTCAAGATGCCGGA
GAGGACACCGGCGCCGAACGGCTGCCTGGACCCAAGGCTGGGCGTCTCCG
ACAAGAGTGCGGTCTGCGAGACGTGCAGGTGAGTGGGAATGGGACACCAT
GCATCGCCTGAAAGGCGTCTCAAACTCTTGTGATTTTTGCTGCATGCACC
CGCGCGAGTTTTCCACCTTCCGTACCGCATGCACTACCCAACTCCGGCCC
TCTATGTAGGTGGCGTTTTCAGTTTTTCTTAAAAAAGCTATTTCGTTGGG
GTTCGTTACCCAAGCGTCACGCCTCCCTATGTTTTCTCCGTTGGGTGGCT
TTGTTTTCCACCATCCCACCATCCTGTCATCCCGTCACCCCATCACGGTC
AGCCTGGCGAGCTTCCTTTCTCCTTCGGGAAAAACGTTTTCTCTTTGTTG
GGCCGTGTTGTCTTATAAATACTCCGGAGTATTTCGCTGTTTCGTTCTGT
AAATACCCCGAGAGCGCATCGGCTCTATTGTACATTGTAGCTCTTTAGTG
GTTCTCCTTGTTTCGCTGTGGACTCGTTTCCCGCCTGTCCCCTTTTTCTG
CGACGCCCGGTATGACTTGCGGGTTATTGGTCGACCCTGTTAGCCCGCCG
ACAGTGTGGTAGTGAAACACGCCTCCTTGGTAGTGCTGTCTGTCCTGTCT
CCGATGTGTGTTGTTTCCTTCTCACGCACGTGTCGCAAAACCCCTCGATA
GTTTAGTATCGCCTACATAGCACGTTTGTTTCATAGTTTTTGTGACTACG
GGCCCCCATGGATGTTTTTGGGCTAGAGAGGTAATGTGAGAAACAACAAC
AACGTGTTTTCGGCTTCTGTCGATCGTCCGGAATCGGTCCTCGGAACGGT
CCTCAGCAAGCTGCTGGTGGACTGCGCGGGGCACTACGGACACATAAAGC
TGGAGCTGCCGGTATTTCACATCGGGTACTTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14480:2825..3809+

>mRNA_L-elsbetiae_contig14480.3294.1 ID=mRNA_L-elsbetiae_contig14480.3294.1|Name=mRNA_L-elsbetiae_contig14480.3294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig14480:2825..3809+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGAGTTCCAGGTTTTTTCGCGCGAGCTGTTCAAGATGCCGGAGAG
GACACCGGCGCCGAACGGCTGCCTGGACCCAAGGCTGGGCGTCTCCGACA
AGAGTGCGGTCTGCGAGACGTGCAGATGAGCGAGTTCCAGGTTTTTTCGC
GCGAGCTGTTCAAGATGCCGGAGAGGACACCGGCGCCGAACGGCTGCCTG
GACCCAAGGCTGGGCGTCTCCGACAAGAGTGCGGTCTGCGAGACGTGCAG
CAAGCTGCTGGTGGACTGCGCGGGGCACTACGGACACATAAAGCTGGAGC
TGCCGGTATTTCACATCGGGTACTTCAAGCAAGCTGCTGGTGGACTGCGC
GGGGCACTACGGACACATAAAGCTGGAGCTGCCGGTATTTCACATCGGGT
ACTTCAAG
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