prot_L-elsbetiae_contig14480.3294.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14480.3294.1
Unique Nameprot_L-elsbetiae_contig14480.3294.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length68
Homology
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.530e-37
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            MSEFQV+SRELFKMPER  APNGCLDPRLGVSDK+AVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK
Sbjct:   76 MSEFQVWSRELFKMPERIAAPNGCLDPRLGVSDKTAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 143          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 6.540e-37
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            MSEFQV+SRELFKMPER  APNGCLDPRLGVSDK+AVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK
Sbjct:   78 MSEFQVWSRELFKMPERIAAPNGCLDPRLGVSDKTAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 145          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S1U7N1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7N1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 9.180e-32
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            +SE  V SR+LF MP+R PAPNGCLDPRLGVSDK +VCETC K LVDC GH+G+I+L LPVFH+GYFK
Sbjct:   37 LSELHVCSRDLFTMPQRLPAPNGCLDPRLGVSDKMSVCETCGKKLVDCPGHFGYIRLNLPVFHVGYFK 104          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: K0SYH6_THAOC (DNA-directed RNA polymerase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYH6_THAOC)

HSP 1 Score: 109 bits (272), Expect = 2.140e-29
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            ++EFQV SR+LF MP+R+PAPNG LDPRLGVSDK + C TC   L DCAGH+G+IKL LP FHIGYFK
Sbjct:   52 LAEFQVTSRDLFTMPQRSPAPNGVLDPRLGVSDKVSTCATCKLKLADCAGHFGYIKLALPCFHIGYFK 119          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S3XKM9_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM9_HETAK)

HSP 1 Score: 108 bits (270), Expect = 7.000e-29
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            +SEF+V +R LF+MP R PAP G LDPRLGVSDK +VC+TC + L DCAGHYG+I+LELPVFHIGYF 
Sbjct:   39 LSEFEVCNRSLFQMPTRNPAPYGVLDPRLGVSDKVSVCQTCRRKLNDCAGHYGNIRLELPVFHIGYFN 106          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A6U0UMH2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UMH2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.250e-29
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            MSE  V SR+LF MP+R PAP GCLDPRLGVSDK ++CETC+K LVDC GH+G+IKL LPVFH+GYFK
Sbjct:   31 MSELHVCSRDLFTMPQRQPAPRGCLDPRLGVSDKMSICETCNKKLVDCPGHFGYIKLHLPVFHVGYFK 98          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A1Z5JM39_FISSO (DNA-directed RNA polymerase subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JM39_FISSO)

HSP 1 Score: 115 bits (288), Expect = 2.100e-28
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            ++EFQV SR+LF+MP RTPAP GCLDPRLGVSDK + C TC K LVDCAGH+G+IKL LPVFHIG+F+
Sbjct:   44 LAEFQVSSRDLFRMPSRTPAPGGCLDPRLGVSDKLSSCATCKKKLVDCAGHFGYIKLALPVFHIGFFR 111          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A7S3DWI7_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWI7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.280e-28
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            ++EFQV SRELF MP RTPA  GCLDPRLGVSDK + C TC K L DCAGH+G IKL LPVFHIG+ +
Sbjct:   56 LAEFQVTSRELFSMPSRTPAHGGCLDPRLGVSDKVSTCTTCKKKLTDCAGHFGFIKLALPVFHIGFMR 123          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A1E7FAF7_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAF7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.700e-27
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            ++EFQV SRELF MP R PAP GCLDPRLGVSDK + C TC + LVDCAGH+G+I+L LPVFHIGY +
Sbjct:   44 LAEFQVTSRELFSMPSRNPAPGGCLDPRLGVSDKISTCATCKRKLVDCAGHFGYIRLALPVFHIGYIR 111          
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Match: A0A448Z7A2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7A2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.760e-27
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    1 MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAGHYGHIKLELPVFHIGYFK 68
            ++EFQV SRELF MP R PAP GCLDPRLGVSDK + C TC K L DCAGH+G+I+L LPVFHIGY +
Sbjct:   51 LAEFQVTSRELFSMPSRNPAPGGCLDPRLGVSDKVSTCHTCKKKLQDCAGHFGYIRLALPVFHIGYLR 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14480.3294.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI81_9PHAE6.530e-3794.12DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FU80_ECTSI6.540e-3794.12DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S1U7N1_9STRA9.180e-3273.53DNA-directed RNA polymerase (Fragment) n=1 Tax=Pha... [more]
K0SYH6_THAOC2.140e-2970.59DNA-directed RNA polymerase (Fragment) n=1 Tax=Tha... [more]
A0A7S3XKM9_HETAK7.000e-2970.59DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A6U0UMH2_9STRA8.250e-2973.53DNA-directed RNA polymerase subunit n=1 Tax=Pingui... [more]
A0A1Z5JM39_FISSO2.100e-2873.53DNA-directed RNA polymerase subunit n=2 Tax=Fistul... [more]
A0A7S3DWI7_9STRA2.280e-2870.59DNA-directed RNA polymerase (Fragment) n=2 Tax=Amp... [more]
A0A1E7FAF7_9STRA4.700e-2770.59DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z7A2_9STRA8.760e-2770.59DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1280coord: 1..68
e-value: 1.1E-19
score: 72.7
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 2..68
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..68
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..68
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 1..68
e-value: 3.8E-21
score: 75.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14480contigL-elsbetiae_contig14480:2828..3809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14480.3294.1mRNA_L-elsbetiae_contig14480.3294.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14480 2825..3809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14480.3294.1 ID=prot_L-elsbetiae_contig14480.3294.1|Name=mRNA_L-elsbetiae_contig14480.3294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSEFQVFSRELFKMPERTPAPNGCLDPRLGVSDKSAVCETCSKLLVDCAG
HYGHIKLELPVFHIGYFK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1