mRNA_L-elsbetiae_contig14442.3278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14442.3278.1
Unique NamemRNA_L-elsbetiae_contig14442.3278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14442.3278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14442contigL-elsbetiae_contig14442:2984..3759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size753
Cds size483
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14442.3278.1prot_L-elsbetiae_contig14442.3278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14442 3277..3759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.0293732-UTR-L-elsbetiae_contig14442:2983..31681622815579.0293732-UTR-L-elsbetiae_contig14442:2983..3168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14442 2984..3168 -
1691682970.9142187-UTR-L-elsbetiae_contig14442:2983..31681691682970.9142187-UTR-L-elsbetiae_contig14442:2983..3168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14442 2984..3168 -
1622815579.043475-UTR-L-elsbetiae_contig14442:3191..32761622815579.043475-UTR-L-elsbetiae_contig14442:3191..3276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14442 3192..3276 -
1691682970.9285805-UTR-L-elsbetiae_contig14442:3191..32761691682970.9285805-UTR-L-elsbetiae_contig14442:3191..3276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14442 3192..3276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.0603628-CDS-L-elsbetiae_contig14442:3276..37591622815579.0603628-CDS-L-elsbetiae_contig14442:3276..3759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14442 3277..3759 -
1691682970.937512-CDS-L-elsbetiae_contig14442:3276..37591691682970.937512-CDS-L-elsbetiae_contig14442:3276..3759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14442 3277..3759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14442.3278.1

>prot_L-elsbetiae_contig14442.3278.1 ID=prot_L-elsbetiae_contig14442.3278.1|Name=mRNA_L-elsbetiae_contig14442.3278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
YLSPHSEGLDKLYYEQPLTAHHRATSHDTTQRHYQSTAPLPALHPGGGPL
STHRVRNLTCSSLGLVSLWTGTYIGHGAGLPAFSICIESNWRLRNNNATS
GHRRPVRWVCHRNQSAMSHEFGRVSRQAIVTIRNMLHMKFKTNAGAPWIL
QLLGSRNHPK*
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mRNA from alignment at L-elsbetiae_contig14442:2984..3759-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14442.3278.1 ID=mRNA_L-elsbetiae_contig14442.3278.1|Name=mRNA_L-elsbetiae_contig14442.3278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=776bp|location=Sequence derived from alignment at L-elsbetiae_contig14442:2984..3759- (Laminarionema elsbetiae ELsaHSoW15)
TATCTCTCTCCGCACTCGGAAGGCCTGGACAAACTGTACTACGAACAACC
GCTAACGGCGCATCATCGGGCAACGTCACATGACACGACACAACGCCATT
ACCAGAGCACTGCTCCGCTGCCTGCTCTGCACCCCGGTGGTGGGCCGTTA
TCTACACACCGTGTACGTAATCTTACTTGCTCGTCTCTGGGCTTGGTCTC
CTTGTGGACCGGTACATACATAGGGCATGGTGCCGGCCTACCCGCTTTTT
CAATATGCATAGAATCCAACTGGCGGCTCCGAAATAATAACGCCACATCT
GGTCACAGGAGGCCTGTGCGCTGGGTGTGCCACCGCAACCAATCGGCAAT
GTCTCATGAGTTCGGACGTGTCTCTCGGCAGGCTATCGTGACCATCCGCA
ACATGCTCCACATGAAATTCAAAACCAACGCGGGAGCACCATGGATCTTG
CAACTTCTTGGAAGTCGCAATCATCCCAAATAGTATACTAAACACGAACA
ACGCGTATGGAAGCCACTCAAGGACCGACTCCCAGGGCCAACTTATTATG
ACTTTTCCCGCGTGTTGGGTCCCCTAGCACCCCCCATCCAGAACTGGACA
CCGATGTCTGGTATTGGTGCTGGTGCTGATGGTGGCATTTATTGGTTGCT
CTCCGGAGGCCACTGCTGCGCTTGAAGGAACTTGCACTCGACGCTCGCGC
AGGGCGCCGCTGCGTGCTCCGAGCGCGCGCGCTCGCTAAGGAGACCGCCC
CGGCGGATTGTGCGATCCCCTTGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14442:2984..3759-

>mRNA_L-elsbetiae_contig14442.3278.1 ID=mRNA_L-elsbetiae_contig14442.3278.1|Name=mRNA_L-elsbetiae_contig14442.3278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig14442:2984..3759- (Laminarionema elsbetiae ELsaHSoW15)
TATCTCTCTCCGCACTCGGAAGGCCTGGACAAACTGTACTACGAACAACC
GCTAACGGCGCATCATCGGGCAACGTCACATGACACGACACAACGCCATT
ACCAGAGCACTGCTCCGCTGCCTGCTCTGCACCCCGGTGGTGGGCCGTTA
TCTACACACCGTGTACGTAATCTTACTTGCTCGTCTCTGGGCTTGGTCTC
CTTGTGGACCGGTACATACATAGGGCATGGTGCCGGCCTACCCGCTTTTT
CAATATGCATAGAATCCAACTGGCGGCTCCGAAATAATAACGCCACATCT
GGTCACAGGAGGCCTGTGCGCTGGGTGTGCCACCGCAACCAATCGGCAAT
GTCTCATGAGTTCGGACGTGTCTCTCGGCAGGCTATCGTGACCATCCGCA
ACATGCTCCACATGAAATTCAAAACCAACGCGGGAGCACCATGGATCTTG
CAACTTCTTGGAAGTCGCAATCATCCCAAATAGTATCTCTCTCCGCACTC
GGAAGGCCTGGACAAACTGTACTACGAACAACCGCTAACGGCGCATCATC
GGGCAACGTCACATGACACGACACAACGCCATTACCAGAGCACTGCTCCG
CTGCCTGCTCTGCACCCCGGTGGTGGGCCGTTATCTACACACCGTGTACG
TAATCTTACTTGCTCGTCTCTGGGCTTGGTCTCCTTGTGGACCGGTACAT
ACATAGGGCATGGTGCCGGCCTACCCGCTTTTTCAATATGCATAGAATCC
AACTGGCGGCTCCGAAATAATAACGCCACATCTGGTCACAGGAGGCCTGT
GCGCTGGGTGTGCCACCGCAACCAATCGGCAATGTCTCATGAGTTCGGAC
GTGTCTCTCGGCAGGCTATCGTGACCATCCGCAACATGCTCCACATGAAA
TTCAAAACCAACGCGGGAGCACCATGGATCTTGCAACTTCTTGGAAGTCG
CAATCATCCCAAATAG
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