mRNA_L-elsbetiae_contig144.3245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig144.3245.1
Unique NamemRNA_L-elsbetiae_contig144.3245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig144.3245.1 vs. uniprot
Match: A0A6H5JSE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.450e-6
Identity = 23/27 (85.19%), Postives = 23/27 (85.19%), Query Frame = 2 
Query:   80 LKRQKRIEHLLHLTLPLKMNWVTITWR 160
            LKR KRIEHLLHLTLPL MNWV  TWR
Sbjct:   20 LKRPKRIEHLLHLTLPLNMNWVNRTWR 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig144.3245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSE1_9PHAE1.450e-685.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig144contigL-elsbetiae_contig144:22233..22684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig144.3245.1prot_L-elsbetiae_contig144.3245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig144 22237..22684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.890626-UTR-L-elsbetiae_contig144:22232..222361622815575.890626-UTR-L-elsbetiae_contig144:22232..22236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 22233..22236 +
1691682969.0082343-UTR-L-elsbetiae_contig144:22232..222361691682969.0082343-UTR-L-elsbetiae_contig144:22232..22236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 22233..22236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.9026597-CDS-L-elsbetiae_contig144:22236..223111622815575.9026597-CDS-L-elsbetiae_contig144:22236..22311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 22237..22311 +
1691682969.0166192-CDS-L-elsbetiae_contig144:22236..223111691682969.0166192-CDS-L-elsbetiae_contig144:22236..22311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 22237..22311 +
1622815575.9127245-CDS-L-elsbetiae_contig144:22603..226841622815575.9127245-CDS-L-elsbetiae_contig144:22603..22684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 22604..22684 +
1691682969.0247777-CDS-L-elsbetiae_contig144:22603..226841691682969.0247777-CDS-L-elsbetiae_contig144:22603..22684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 22604..22684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig144.3245.1

>prot_L-elsbetiae_contig144.3245.1 ID=prot_L-elsbetiae_contig144.3245.1|Name=mRNA_L-elsbetiae_contig144.3245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MQAPRRAPVLARVLCLIERLDLVQTLKRQKRIEHLLHLTLPLKMNWVTIT
WR
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mRNA from alignment at L-elsbetiae_contig144:22233..22684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig144.3245.1 ID=mRNA_L-elsbetiae_contig144.3245.1|Name=mRNA_L-elsbetiae_contig144.3245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig144:22233..22684+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCATGCAGGCGCCACGAAGAGCGCCCGTCCTCGCTCGGGTGCTGTGTC
TGATCGAACGGCTGGATCTAGTGCAAACGGTGAGGCAAATCTCTTCTTGT
TGAGCAGAGAAAACAGAAAACTAGCAACTCCGACGGAGACGCAAGTTCCG
AGTTTCATCATCACGCTTTTACCGTGGTTTTTCGGACTGTCTTGGCTGCT
GTTTGGCGTTATCAGGCTTTCGCAGAGAGAGACAAGAGATGTCTTGGTTT
GTTCACGAGGCTGATTTTTCGCATGCGGGGCCGTAGGGAAACACGTTTTT
TCTTGGACGCAGCTCAAAACGTGAAGGTGTTCCGAACCAGCTTGTCCTCC
CACATTTCCCTTTCCTGGCAGCTAAAGCGACAAAAAAGAATCGAGCACCT
GCTTCACCTCACTCTTCCGCTTAAGATGAACTGGGTAACTATAACGTGGC
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig144:22233..22684+

>mRNA_L-elsbetiae_contig144.3245.1 ID=mRNA_L-elsbetiae_contig144.3245.1|Name=mRNA_L-elsbetiae_contig144.3245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig144:22233..22684+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCGCCACGAAGAGCGCCCGTCCTCGCTCGGGTGCTGTGTCTGAT
CGAACGGCTGGATCTAGTGCAAACGATGCAGGCGCCACGAAGAGCGCCCG
TCCTCGCTCGGGTGCTGTGTCTGATCGAACGGCTGGATCTAGTGCAAACG
CTAAAGCGACAAAAAAGAATCGAGCACCTGCTTCACCTCACTCTTCCGCT
TAAGATGAACTGGGTAACTATAACGTGGCGACTAAAGCGACAAAAAAGAA
TCGAGCACCTGCTTCACCTCACTCTTCCGCTTAAGATGAACTGGGTAACT
ATAACGTGGCGA
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