mRNA_L-elsbetiae_contig14339.3205.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14339.3205.1
Unique NamemRNA_L-elsbetiae_contig14339.3205.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14339.3205.1 vs. uniprot
Match: D8LFP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.460e-17
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    4 VSKSTFSLALLKRLATCALKVAPSSVTRITFDKQTPRFSRCDRAWLSKYGDEFCSGASLVVHVNSPTAASRLLGRGGG-HRP 246
            VSKS FSL L+KRLAT AL+V P  +TR TF K+   FS  D +WL +YG+E C+GA LVV++N P   SR  G GGG H+P
Sbjct:  483 VSKSAFSLPLVKRLATRALEVCPGHITRTTFGKRNSVFSGNDDSWLHQYGEECCNGARLVVYINVPKDKSRPGGNGGGGHQP 564
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14339.3205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFP5_ECTSI1.460e-1756.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14339contigL-elsbetiae_contig14339:2239..3539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.904258-CDS-L-elsbetiae_contig14339:2240..23481622815572.904258-CDS-L-elsbetiae_contig14339:2240..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14339 2241..2348 -
1691682967.3463538-CDS-L-elsbetiae_contig14339:2240..23481691682967.3463538-CDS-L-elsbetiae_contig14339:2240..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14339 2241..2348 -
1622815572.9159658-CDS-L-elsbetiae_contig14339:3371..35391622815572.9159658-CDS-L-elsbetiae_contig14339:3371..3539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14339 3372..3539 -
1691682967.3557818-CDS-L-elsbetiae_contig14339:3371..35391691682967.3557818-CDS-L-elsbetiae_contig14339:3371..3539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14339 3372..3539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14339.3205.1prot_L-elsbetiae_contig14339.3205.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14339 2241..3539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14339.3205.1

>prot_L-elsbetiae_contig14339.3205.1 ID=prot_L-elsbetiae_contig14339.3205.1|Name=mRNA_L-elsbetiae_contig14339.3205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
FVSKSTFSLALLKRLATCALKVAPSSVTRITFDKQTPRFSRCDRAWLSKY
GDEFCSGASLVVHVNSPTAASRLLGRGGGHRPPGMDADDDSA
back to top

mRNA from alignment at L-elsbetiae_contig14339:2239..3539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14339.3205.1 ID=mRNA_L-elsbetiae_contig14339.3205.1|Name=mRNA_L-elsbetiae_contig14339.3205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1301bp|location=Sequence derived from alignment at L-elsbetiae_contig14339:2239..3539- (Laminarionema elsbetiae ELsaHSoW15)
TTCGTTTCGAAGTCGACCTTCAGCCTCGCCCTGCTCAAGCGCCTGGCCAC
GTGCGCCCTCAAGGTTGCCCCCAGTAGCGTCACGCGGATCACGTTCGACA
AGCAAACCCCGAGGTTTTCGAGATGCGACCGGGCCTGGCTCAGCAAGTAT
GGGGACGAGTTCTGCAGCGTGAGTTATGTACAGCATGTATGTACTTTTGG
TATATTGCAGTACCCCCGTGCGCGCGCGCTCTTGGCGGTCGTGGAGTGCC
CGCCGTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCGTGAGTGATAACCAC
GCGCGCGCGCTTTGCGGCCGTGACAATGCCGTGAAATACGGGCTGGGCGG
GCCCCCTGTGTTTATGTTCTGTTCGTGTTGCCCCCTCCTTCTTGATGTTT
GGATCTTGATGGGCGTCGGAGAGCGGCGTGGCGCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTTTTTTTTTGGTGGTTTCCCGCCCGCCCCGTTTGTCTC
TTTTCCCCCCCCCGGCCCCAAACAAACCAGCCTTNNNNNNNNNNTTGTTT
TGTTGCTGGTGCCCCCCCCCTTTTGTGTTTTGGGTTTTTGGTGGGGGTGG
GGGGGGGGGGGGGCGCCCCCCCCCCCCCCCCTCTGTTCAACCTGTTGTAC
ATTGGCGGGGCCTCAGTCAACCTGTTGTACATATCTACACTCCGGAGTCC
GAAAAGAAGCGTCCTTTATACCCCGGACTCTGTGTCTCATTCGTTTCACT
GACTGCTAGTGTCCCGGCTTGTTCAGTGTTGGTATTCGAGCAATTTGCTA
CAGTGCTGATCGTCAAGCATGGTACGGACATCGGTATGTCCGCAGGGTTT
CGAAGCTCTGCGGCATTCTCGCAGCGACTCTCTCGGCTCCGGCCGATCAT
TCACGTTTTTTTGTTATTTTTTTTGTGGTCCGTCTTGTACATCAATCATC
CTCTGTGTGTATGACGGGGCCTCGAAAGGGGGGCCGGAGATCATCATCCA
TCAGGAGGGCGAGAGCAACGAATGAGTACATCCGCGGACCCCCCCCCCCC
CCCCCCTCCCCGGCCGGCCGGCCGATCCCTCATATTATCCCGTCTCCCCT
TCCCCCTCTCTGCTGCATCCGCTGCCCGTCCTCTTCGAACCCTCACATTA
TCCCTTCTCCTCTTGGCCCTCTGCTGCATCCGCTCGAAAAGGGGGCGAGC
CTCGTCGTGCACGTGAACTCCCCGACGGCCGCAAGCCGCCTTCTCGGTAG
GGGGGGGGGGCACCGCCCGCCGGGGATGGACGCCGATGATGATTCCGCGG
T
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14339:2239..3539-

>mRNA_L-elsbetiae_contig14339.3205.1 ID=mRNA_L-elsbetiae_contig14339.3205.1|Name=mRNA_L-elsbetiae_contig14339.3205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig14339:2239..3539- (Laminarionema elsbetiae ELsaHSoW15)
TTCGTTTCGAAGTCGACCTTCAGCCTCGCCCTGCTCAAGCGCCTGGCCAC
GTGCGCCCTCAAGGTTGCCCCCAGTAGCGTCACGCGGATCACGTTCGACA
AGCAAACCCCGAGGTTTTCGAGATGCGACCGGGCCTGGCTCAGCAAGTAT
GGGGACGAGTTCTGCAGCTTCGTTTCGAAGTCGACCTTCAGCCTCGCCCT
GCTCAAGCGCCTGGCCACGTGCGCCCTCAAGGTTGCCCCCAGTAGCGTCA
CGCGGATCACGTTCGACAAGCAAACCCCGAGGTTTTCGAGATGCGACCGG
GCCTGGCTCAGCAAGTATGGGGACGAGTTCTGCAGCGGGGCGAGCCTCGT
CGTGCACGTGAACTCCCCGACGGCCGCAAGCCGCCTTCTCGGTAGGGGGG
GGGGGCACCGCCCGCCGGGGATGGACGCCGATGATGATTCCGCGGGGGCG
AGCCTCGTCGTGCACGTGAACTCCCCGACGGCCGCAAGCCGCCTTCTCGG
TAGGGGGGGGGGGCACCGCCCGCCGGGGATGGACGCCGATGATGATTCCG
CG
back to top