mRNA_L-elsbetiae_contig1419.3113.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1419.3113.1
Unique NamemRNA_L-elsbetiae_contig1419.3113.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.830e-20
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   28 EVKPSTHLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRF 312
            E   S+ +GC+ D   + RI       +S MT E C +EC+G +Y+GMQY T+C+CGG   D  QHGEST C   CPG+ ++ CGG +++ VY +
Sbjct:  185 ETSTSSLVGCYQDES-DARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.290e-19
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   40 STHLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRF 312
            S+ +GC+ D   + RI       SS MT ERC +EC G +Y+GMQY  +C+CGG+  D  QHGEST C   CPG+ D+ CGG +++ VY +
Sbjct:  839 SSFVGCYQDES-DARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSY 928          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-17
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   16 YRSREVKPSTHLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRF 312
            Y +     S+ +GC+ D   + R+       SS MT E C +EC G  Y+GMQY ++C+CGG+  +  ++GES+ C   CPG+ ++ CGG +++ VY +
Sbjct:   65 YTNESTPTSSFVGCYQDES-DARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSY 162          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: UPI000444A20B (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A20B)

HSP 1 Score: 86.7 bits (213), Expect = 1.870e-17
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   43 THLGCFTD---RGGEERIFADKARSSSQMTSERCNSEC--AGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRFG 315
            TH+GC+TD   R     IF+D    SS +T E C S C  AG++Y G++Y  QCWCG + +       STGCT  CPGN +E CGG W++DVYR G
Sbjct:  610 THIGCYTDSDTRVLSTNIFSD----SSSLTIESCASSCTSAGWTYSGVEYGQQCWCGASISS--SASASTGCTYTCPGNSNELCGGNWAIDVYRAG 699          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-13
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 WKMSIYRSR--EVKPSTHLGCFTDRGGEERIFADKARSSSQMTSERCNSECA--GFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRF 312
            + MS+Y +   EV PS + GCF D   + R+F  +  S   +T+E C   C+  GFS+YG+QY  QCWCG  + ++  +G+   C  PC G+  + CGG +S+D+Y  
Sbjct:  212 YAMSVYENDNVEVDPS-YRGCFADTA-DNRVF-HQTTSDFDLTTEHCGLLCSIEGFSFYGLQYSIQCWCGDHNTEYSANGDGV-CDMPCGGDAYDMCGGFYSMDIYSI 315          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: A0A165ABE4_XYLHT (WSC-domain-containing protein n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A165ABE4_XYLHT)

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-13
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    7 MSIYRSREVKPS-THLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVY 306
            +++Y+     P    +GC+T+ G   R   DK+ + S  T E C + C+G+SY+G++Y  +C+CG   +         GCT PC GN  E CGG   +D+Y
Sbjct:  913 LNMYQKNSTTPGYVFMGCYTE-GTNARALPDKSTAGSSNTVESCYTFCSGYSYFGVEYSDECYCGNTLSTGSVPATDNGCTMPCAGNSTEMCGGPNRLDLY 1012          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: A0A4Q4Q087_9PLEO (WSC domain-containing protein n=1 Tax=Alternaria gaisen TaxID=167740 RepID=A0A4Q4Q087_9PLEO)

HSP 1 Score: 72.8 bits (177), Expect = 2.880e-13
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    4 KMSIYRSREVKPSTHLGCFTDRGGEERIFADKAR-SSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVY 306
            ++S Y+    K +T+LGC  D     R+  DK+  S + +T ERC + CAGF Y+G+Q+  +C+CG       QH   + C+ PC G+ ++ CGG+   +VY
Sbjct:  127 QLSTYQK---KTTTYLGCLVDSNN--RVLGDKSFVSEANLTVERCETLCAGFKYFGIQWGQECYCGNTFKYATQHKPESDCSLPCTGDKNQRCGGSLRSNVY 223          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: A0A8E2JB36_9PEZI (WSC-domain-containing protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JB36_9PEZI)

HSP 1 Score: 70.5 bits (171), Expect = 8.070e-13
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   43 THLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVY 306
            T+ GC TD  G  R+ A++    + MT E C + CAG++Y+G +Y TQC+CG + A+       T C+  CPGN  E CG    + +Y
Sbjct:   81 TYAGCHTDSVGA-RVLAEQYTYDNAMTVEECATFCAGYTYFGTEYGTQCFCGNSFANPTSEAAETDCSFLCPGNSQEYCGAGNRLTMY 167          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: A0A409YDM9_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409YDM9_9AGAR)

HSP 1 Score: 70.9 bits (172), Expect = 2.090e-12
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   43 THLGCFTDRGGEERIFADKARSSSQMTS-ERCNSEC--AGFSYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVYRFG 315
            T+LGCFTD G   R+  ++  S+    S E C + C  AGF+  G++Y  +C+CG A   +D +G S GCTTPCPG++  TCGG+ ++ +Y  G
Sbjct:   35 TNLGCFTDGGP--RVLREEQTSNLDAESFEYCGNICYDAGFALAGVEYGHECFCGNAIL-YD-YGTSEGCTTPCPGDESNTCGGSLAIQIYSTG 124          
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Match: C3YQZ5_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YQZ5_BRAFL)

HSP 1 Score: 71.2 bits (173), Expect = 4.740e-12
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 1
Query:   28 EVKPSTHLGCFTDRGGEERIFADKARSSSQMTSERCNSECA--GFSYYGMQYETQCWCGGADADHDQHGE--STGCTTPCPGNDDETCGGAWSVDVYRFGDP 321
            E     HLGC+ D    ERI   +   SSQ T   C   C   G+S  G++   +C+CG +    D + E  S GCT PC GN +ETCGG W++D+Y+   P
Sbjct:  488 EASELVHLGCYVDYN--ERILKYERHISSQQTVVHCGYWCRKNGYSLAGVEGGEECYCGTSTHFVDLNSETPSGGCTMPCSGNSEETCGGGWAIDIYQVSAP 587          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1419.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL0_ECTSI8.830e-2043.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS1_ECTSI1.290e-1946.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE8_ECTSI1.690e-1736.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000444A20B1.870e-1747.92hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]
A0A6H5JVT8_9PHAE1.120e-1337.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A165ABE4_XYLHT2.100e-1334.65WSC-domain-containing protein n=1 Tax=Xylona hevea... [more]
A0A4Q4Q087_9PLEO2.880e-1336.27WSC domain-containing protein n=1 Tax=Alternaria g... [more]
A0A8E2JB36_9PEZI8.070e-1338.64WSC-domain-containing protein n=1 Tax=Lepidopterel... [more]
A0A409YDM9_9AGAR2.090e-1242.55Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
C3YQZ5_BRAFL4.740e-1239.22Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1419contigL-elsbetiae_contig1419:18089..19637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue7.5e-18
Seed eggNOG ortholog2880.D7FLI8
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCarbohydrate-binding WSC
Ec32 orthologEc-06_001630.3
Exons3
Model size347
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1419.3113.1prot_L-elsbetiae_contig1419.3113.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1419 18089..19631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.9869149-CDS-L-elsbetiae_contig1419:18088..182471622815564.9869149-CDS-L-elsbetiae_contig1419:18088..18247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 18089..18247 -
1691682962.4963436-CDS-L-elsbetiae_contig1419:18088..182471691682962.4963436-CDS-L-elsbetiae_contig1419:18088..18247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 18089..18247 -
1622815565.0012324-CDS-L-elsbetiae_contig1419:18800..188571622815565.0012324-CDS-L-elsbetiae_contig1419:18800..18857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 18801..18857 -
1691682962.5097477-CDS-L-elsbetiae_contig1419:18800..188571691682962.5097477-CDS-L-elsbetiae_contig1419:18800..18857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 18801..18857 -
1622815565.0110369-CDS-L-elsbetiae_contig1419:19508..196311622815565.0110369-CDS-L-elsbetiae_contig1419:19508..19631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 19509..19631 -
1691682962.5189586-CDS-L-elsbetiae_contig1419:19508..196311691682962.5189586-CDS-L-elsbetiae_contig1419:19508..19631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 19509..19631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.0234756-UTR-L-elsbetiae_contig1419:19631..196371622815565.0234756-UTR-L-elsbetiae_contig1419:19631..19637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 19632..19637 -
1691682962.5273402-UTR-L-elsbetiae_contig1419:19631..196371691682962.5273402-UTR-L-elsbetiae_contig1419:19631..19637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 19632..19637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1419.3113.1

>prot_L-elsbetiae_contig1419.3113.1 ID=prot_L-elsbetiae_contig1419.3113.1|Name=mRNA_L-elsbetiae_contig1419.3113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSIYRSREVKPSTHLGCFTDRGGEERIFADKARSSSQMTSERCNSECAGF
SYYGMQYETQCWCGGADADHDQHGESTGCTTPCPGNDDETCGGAWSVDVY
RFGDPAPPPPTPP
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mRNA from alignment at L-elsbetiae_contig1419:18089..19637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1419.3113.1 ID=mRNA_L-elsbetiae_contig1419.3113.1|Name=mRNA_L-elsbetiae_contig1419.3113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1549bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:18089..19637- (Laminarionema elsbetiae ELsaHSoW15)
TGGAAGATGTCGATCTATCGCTCGCGTGAGGTCAAGCCATCGACCCACCT CGGGTGCTTCACGGACAGAGGCGGCGAGGAACGCATCTTCGCCGACAAGG CCCGGTCTTCCTCCCAGATGACTTCTGAGGTGACTGTATGACAACCCGAC AATGATATTGTGTGACCAGAGTCGGAGGAGTGGTCCAAAGTGGCCGGGGC GAACGGGTGAAAGGGCCCTCTAGGAGTGGAAGGTGAACTGCGATTAGATA CGGTGGTCCATCCCCTTGAAAACACACAACAAGGCCGTTCTCGCCTCTAC AAAAGGCAGCATGGGCGGAGGACGATCGGTGGGTTTTTGGCTGTGCGTTG TTTCAGATCACAGAAAGTATTATGTAAGCCAAGAAGCAATGCTTCTTTAA AAGGGTGTTCTTGTTTTGGAGCGCTCGCGCGTATCGCGTGATCGTTGACC ACGCATCAAGGTTGCAAACGAAGCACCTTGTTTTATGTTTGATGTTGCTC CCTCAGCAGATGTCGTTGACGTTCGGGCAATCTCAGCGTTTATGGTGGTT TGGCTCAGAGCGACTGCTCTTGCTCGTCGGACGGATCCCGCTCTAAATAG TTTGACTCGTGCGTTTTCAGGTTTACTTCGAAGTAGCGGTCTGTGCTTCC GAACAAAACAAGCTCGACACGGTCGAACCTCCTCTACTAGCTCGATTTTC TCCAGAGCCGAATGTATGTTTTACTTGATGCCTTCACCCCGTGCATCGTG CTGGTTGCTGCTCTGACGACGCCGAGATAGCGCTGCAACTCGGAGTGCGC TGGCTTCAGCTACTACGGAATGCAATATGAAACCCAGGTACTTTTTGTAA AAACAAATTCCCTCCCATTATTGGCATATTTTTGTTGTCTAGCCCACTGG CCCCCTTCCTGCACTACGACTGGCTAGACGGCACCAGCCGGGGTCACACA CGAGGGGGGGGGTGGACCCCCTCCTGCGGTGCCTGCCTGTGATGCTTTTA TCGCTGTACTGATGTGATAGTCGGTCGTCTTGTGCCACGTGGCATTCCGC TAGGCTCCCTGTATCTACTACCTCAGTTTTCGTACTGGGACTACGCTCGT TAAGGGAGATTGGAGCCGCTGCATGCTTTTTTGGCTCCGATATCCCTTAA CGTTTGGTGGTGGTTGAAGAAGTGGGCTAACTTTCTTGCCTGAAGAGCTT GTCAGGGTTGCGGCCTCCTTCGTCAGTCCCGGAACGTGTTGCGATCATGT TTCGATTTGCTTCTCCTCTGCCTGTCTACCGTTCTTCCCGCAAAGTCAGC ATCTCTCCCGCGCGGTCCGCTAAATATATTCAATCCCACGTTTCCCGTGC CCGCGCCCGCCCTCTCTCCTGCTCTCTTCGCTTTTCAAAGTGCTGGTGCG GGGGCGCTGACGCCGATCACGACCAGCACGGGGAGTCAACCGGCTGCACG ACACCTTGCCCCGGCAACGACGACGAAACCTGCGGGGGCGCCTGGAGCGT GGACGTATACCGCTTCGGAGACCCCGCGCCACCACCACCTACCCCTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1419:18089..19637-

>mRNA_L-elsbetiae_contig1419.3113.1 ID=mRNA_L-elsbetiae_contig1419.3113.1|Name=mRNA_L-elsbetiae_contig1419.3113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:18089..19637- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGATCTATCGCTCGCGTGAGGTCAAGCCATCGACCCACCTCGGGTG
CTTCACGGACAGAGGCGGCGAGGAACGCATCTTCGCCGACAAGGCCCGGT
CTTCCTCCCAGATGACTTCTGAGATGTCGATCTATCGCTCGCGTGAGGTC
AAGCCATCGACCCACCTCGGGTGCTTCACGGACAGAGGCGGCGAGGAACG
CATCTTCGCCGACAAGGCCCGGTCTTCCTCCCAGATGACTTCTGAGCGCT
GCAACTCGGAGTGCGCTGGCTTCAGCTACTACGGAATGCAATATGAAACC
CAGCGCTGCAACTCGGAGTGCGCTGGCTTCAGCTACTACGGAATGCAATA
TGAAACCCAGTGCTGGTGCGGGGGCGCTGACGCCGATCACGACCAGCACG
GGGAGTCAACCGGCTGCACGACACCTTGCCCCGGCAACGACGACGAAACC
TGCGGGGGCGCCTGGAGCGTGGACGTATACCGCTTCGGAGACCCCGCGCC
ACCACCACCTACCCCTCCCTGCTGGTGCGGGGGCGCTGACGCCGATCACG
ACCAGCACGGGGAGTCAACCGGCTGCACGACACCTTGCCCCGGCAACGAC
GACGAAACCTGCGGGGGCGCCTGGAGCGTGGACGTATACCGCTTCGGAGA
CCCCGCGCCACCACCACCTACCCCTCCC
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