mRNA_L-elsbetiae_contig14127.3077.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14127.3077.1
Unique NamemRNA_L-elsbetiae_contig14127.3077.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.110e-57
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1
Query:   22 MSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            MS LD  GRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPD+HLPSCSTCQVYLKLPAYTS+ ALEAKLKHAITEGQDHFALD
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.990e-54
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            VKWLA VMS LD  GRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPD+HLPSCSTCQVYLKLPAYTS+ ALEAKLKHAITEGQDHFALD
Sbjct: 2260 VKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.100e-33
Identity = 64/99 (64.65%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            V  L  V+S LD   RR FL FVTG+PRLP+GGF AL+PRLTVV+K+        PD HLPSCSTCQVYLKLPAYT K  L AKL  AI EG++HFALD
Sbjct:  245 VAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.710e-28
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            ++ L  V+S LD   RR F++F+TG+PRLP+GGFG LRPRLTVV+K V       PD  LPSCSTCQVYLKLP Y+S+  L+ +L  A+ EGQ HFALD
Sbjct: 2700 IRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.170e-25
Identity = 57/98 (58.16%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFAL 294
            V+ L  V+S LDP  RRQFL F TG+PRLP+GGF AL PRLT+V+K+   LPG +PD  LPS STC  YLKLP YTSK  +  +L  AIT+G   F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKP--LPGRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A482RGR4_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 3.100e-24
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVK------KEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            V+ L  V+       RR F+RF+TG PRLP GGFGAL+P LT+V+      +E D L        LP+CSTC VYLKLPAY+SK  L AKL  AI EGQ+ FA D
Sbjct:   79 VRALLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEADAL--------LPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: UPI001C918089 (E3 ubiquitin-protein ligase TRIP12-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C918089)

HSP 1 Score: 102 bits (254), Expect = 3.070e-23
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   10 LAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFAL 294
            L  V+S LDP  RRQFL F TG+PRLP+GGF AL P LTVV+K V+  PG +PDT+LPS  TC  YLKLP Y+S      +L  AI+EGQ  F L
Sbjct:  978 LVTVLSELDPRQRRQFLSFATGSPRLPVGGFRALTPPLTVVRKAVE--PGHSPDTYLPSVMTCVNYLKLPEYSSVEVTRRQLTLAISEGQLSFML 1070          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A6A4X1F7_AMPAM (E3 ubiquitin-protein ligase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4X1F7_AMPAM)

HSP 1 Score: 101 bits (252), Expect = 5.780e-23
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   10 LAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFAL 294
            L  V+S LDP  RRQFL F TG+PRLP+GGF AL P LTVV+K V+  PG  PDT+LPS  TC  YLKLP Y+S      +L  AI+EGQ  F L
Sbjct: 1362 LVTVLSELDPRQRRQFLSFATGSPRLPVGGFRALTPPLTVVRKAVE--PGHCPDTYLPSVMTCVNYLKLPEYSSVEVTRRQLTLAISEGQLSFML 1454          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A0C4ESY2_PUCT1 (HECT-type E3 ubiquitin transferase n=3 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4ESY2_PUCT1)

HSP 1 Score: 100 bits (249), Expect = 1.480e-22
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFAL 294
            ++ L  +MSS D   RRQFL+F+TG P+LPIGGF  L P LTVV+K  +  PG +PD +LPS  TC  YLKLP Y+S+     KL  AI EG D F L
Sbjct: 1892 IRGLINIMSSYDVPSRRQFLQFITGAPKLPIGGFRGLHPALTVVRKAAE--PGHSPDEYLPSVMTCVNYLKLPEYSSQDVAAEKLTIAIKEGADSFHL 1987          
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Match: A0A7S1G2E8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.490e-22
Identity = 52/99 (52.53%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 VKWLAGVMSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDTHLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD 297
            V+ L  +MS      RR FLRFVTG PRLP+GGF +LRP LT+VK      PG   D  +P+C  C VYLKLPAYT  V L  KL  AI +GQ+ F +D
Sbjct: 2812 VQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEMD 2908          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14127.3077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4E7_ECTSI9.110e-5793.48HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2P5_9PHAE2.990e-5492.93HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7D6_9STRA4.100e-3364.65HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2R5GSN0_9STRA1.710e-2858.59HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea... [more]
A0A7S1CCF7_9STRA2.170e-2558.16HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A482RGR4_9ARCH3.100e-2452.38HECT domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001C9180893.070e-2357.89E3 ubiquitin-protein ligase TRIP12-like n=1 Tax=Am... [more]
A0A6A4X1F7_AMPAM5.780e-2357.89E3 ubiquitin-protein ligase n=1 Tax=Amphibalanus a... [more]
A0A0C4ESY2_PUCT11.480e-2253.06HECT-type E3 ubiquitin transferase n=3 Tax=Puccini... [more]
A0A7S1G2E8_9STRA1.490e-2252.53HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14127contigL-elsbetiae_contig14127:2751..4563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.3e-43
Seed eggNOG ortholog2880.D7G4E7
KEGG koko:K03874,ko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0170@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Ec32 ortholog descriptionHECT
Ec32 orthologEc-13_002660.1
Exons2
Model size300
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14127.3077.1prot_L-elsbetiae_contig14127.3077.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14127 2751..4542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.445485-CDS-L-elsbetiae_contig14127:2750..28491622815561.445485-CDS-L-elsbetiae_contig14127:2750..2849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14127 2751..2849 -
1691682960.5617058-CDS-L-elsbetiae_contig14127:2750..28491691682960.5617058-CDS-L-elsbetiae_contig14127:2750..2849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14127 2751..2849 -
1622815561.4575562-CDS-L-elsbetiae_contig14127:4362..45421622815561.4575562-CDS-L-elsbetiae_contig14127:4362..4542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14127 4363..4542 -
1691682960.580022-CDS-L-elsbetiae_contig14127:4362..45421691682960.580022-CDS-L-elsbetiae_contig14127:4362..4542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14127 4363..4542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.4697232-UTR-L-elsbetiae_contig14127:4542..45631622815561.4697232-UTR-L-elsbetiae_contig14127:4542..4563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14127 4543..4563 -
1691682960.5929313-UTR-L-elsbetiae_contig14127:4542..45631691682960.5929313-UTR-L-elsbetiae_contig14127:4542..4563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14127 4543..4563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14127.3077.1

>prot_L-elsbetiae_contig14127.3077.1 ID=prot_L-elsbetiae_contig14127.3077.1|Name=mRNA_L-elsbetiae_contig14127.3077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MSSLDPGGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPD
THLPSCSTCQVYLKLPAYTSKVALEAKLKHAITEGQDHFALD*
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mRNA from alignment at L-elsbetiae_contig14127:2751..4563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14127.3077.1 ID=mRNA_L-elsbetiae_contig14127.3077.1|Name=mRNA_L-elsbetiae_contig14127.3077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1813bp|location=Sequence derived from alignment at L-elsbetiae_contig14127:2751..4563- (Laminarionema elsbetiae ELsaHSoW15)
GTGAAGTGGCTGGCGGGCGTGATGTCCTCCCTGGACCCCGGGGGGCGACG GCAGTTCCTCCGGTTCGTCACGGGCACCCCCCGCCTTCCCATCGGGGGCT TCGGGGCCCTGCGCCCGCGGCTGACGGTGGTGAAGAAGGAGGTGGACGTT CTACCCGGCGGGACCCCCGACACCCACCTCCCGAGCTGCTCGACCTGCCA GGTGTGTTTTTTTTCAAAGTTTGTCATTTTTATTTTTATTGTTGTCTCTA ACTCCAGTCGTATAAATAATAAATAGGTGTACACACATTTGTGAGGGTAC ACACATTTTTTGCCTTTTTTTTTTCTTGTCTTTTTTCTGGTTTTTGGCGT GTGGTGTCAGCGTGTGATGTCGTGGCTGAAAGCTGTGCTCACGTTTGGAT AAAGAGAGTTGTTTTTCGTTATGTACCGCACAAGCAAGGATTTTTTAAAA ATAAACAATGAATCAAAGATGGAACCTACCCCACACTTAGAGCAAGGACT CGATATGGGGTTCAAACGGTATGCCATGACAAGAGACGTAATATTTGGCG AAGCGAGCAGAAAAACAACCTAAAATATCGGAAGAGTTCAACATCTCCCC TGCAAAGATTTAAGATTTTCCGTCCTAGATATCTAGACAATTCTGCTGGC ACGTTGTTAGCAAGTGGCGCATTGTTTGGTGCTGGCGCAGCGTGTTTTTT TTTTTTTTTTTTTTTTTTTTCTTTTTTTTGTTTTTTTTTCTGTCCCTCTT GTCCCTTTCTCCCNNNNNNNNNNATGGATATATATATATCTTTATTTATT TTTGTCTGCCCATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCC CCCACTTCTACTCTAGCCATACGACCCAACCGGGGTCACATAGGAGGGGG GGGTTGGACCCCCTCCTGCGGTGCTTGCCTAGTTTTTTTTTATCGCGAGC AGGGTTCAGCACTCCCCACAGCATCGAGTGTCGTCATAAAACAGCAGTAG TGCTCCGTCTCACGAAAGGCAACAGCTACCCAGCCAGCTCGGCACCAGTT TCATATTGACACAACGTCGAGTGTCGTTATACAACAGTAATAGTGCTACG TCTCGCAAAAGGCACCAGCTACCCCGCCAGCTCGGCATCAGTTTCATGCT GGCAGTCCCGTGCACAGTCCCTCGCCAGGCCGGCATCAGTTTTCAAAGAA AACCAGTCAATCAAAATTGAAGCCTAACCGACAATGAGACGGGACTCCAT GAGATTCAATCGGTATTTCATATAGTGACGTAATATTAGGCCGGCCGAGT AGAAAAACACCGATGTAAAATATAAGAACAATTCACCATCTCCCCTGCAT CTCTGCCAGGTCAAACCACACGTGCATCAGTTTTTCGCCGTTCTCTCTCG GTTGTCCGTCGAATGTCTCCGAAGGGGTCGCGTGTCTCGAAAGGAGTTCC GTATCTTGAAAGGAGTTCCGTGTCTCGAAAGGATTTCCGTGTCTCGAGAG GGGGATGCTTGGCCAATCAGCGATGAAATGAACAAGCCAGGAAGAATAAA AAAAACTTTTGAGTATAACCCAATTCCGCCTGTTCTGCTGTTGTTCTGTC GTCGGCTGTGCCATCTGTGCGTGCGCTTGTGCGTGTGCGTGTGCGTGTGC GTGTGCGTGTGCGTGTGCGTGTGCGTGTTATTTGCTGTCGTTGTTTGTCG TAATAAATAACCAGGTGTACTTGAAGCTGCCGGCGTACACCTCCAAGGTC GCGCTGGAGGCCAAGCTGAAGCACGCCATCACGGAAGGGCAGGACCACTT TGCGCTAGACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14127:2751..4563-

>mRNA_L-elsbetiae_contig14127.3077.1 ID=mRNA_L-elsbetiae_contig14127.3077.1|Name=mRNA_L-elsbetiae_contig14127.3077.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig14127:2751..4563- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTCCCTGGACCCCGGGGGGCGACGGCAGTTCCTCCGGTTCGTCAC
GGGCACCCCCCGCCTTCCCATCGGGGGCTTCGGGGCCCTGCGCCCGCGGC
TGACGGTGGTGAAGAAGGAGGTGGACGTTCTACCCGGCGGGACCCCCGAC
ACCCACCTCCCGAGCTGCTCGACCTGCCAGATGTCCTCCCTGGACCCCGG
GGGGCGACGGCAGTTCCTCCGGTTCGTCACGGGCACCCCCCGCCTTCCCA
TCGGGGGCTTCGGGGCCCTGCGCCCGCGGCTGACGGTGGTGAAGAAGGAG
GTGGACGTTCTACCCGGCGGGACCCCCGACACCCACCTCCCGAGCTGCTC
GACCTGCCAGGTGTACTTGAAGCTGCCGGCGTACACCTCCAAGGTCGCGC
TGGAGGCCAAGCTGAAGCACGCCATCACGGAAGGGCAGGACCACTTTGCG
CTAGACTAAGTGTACTTGAAGCTGCCGGCGTACACCTCCAAGGTCGCGCT
GGAGGCCAAGCTGAAGCACGCCATCACGGAAGGGCAGGACCACTTTGCGC
TAGACTAA
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