mRNA_L-elsbetiae_contig10.3.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: G7K1Z2_MEDTR (Signal anchor, putative n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K1Z2_MEDTR) HSP 1 Score: 326 bits (836), Expect = 1.110e-103 Identity = 200/329 (60.79%), Postives = 219/329 (66.57%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SL----------KTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR-K*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANAS 954 SSRTA MGEQPNPW++L Q A SRHRGAKP RR + D STQ+R+ITK +FR CST RS SQA+FCL T IS +ETF RLRYLLG RP +T L+LS G IR++S L L K HL CA K QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH GF + +TNF NLPALGRRQPPY+VL+L GDLCFC LRPS P + S GI T PSTT F L LGPD P DEP GG LRFSGH ILT+V TQADIL SASS PA A S Sbjct: 139 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRYD-------DGPSTQHRRITKAEFRPCSTGRSCSQATFCLYTRGPISVWPKETFARLRYLLGDLRP-ETVYLRLSL------GLYWHKIRILSL--LEWYLIDGSSPPPPRKEAFFAFHLSCAGKV----QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHWGFGRRLPCHRVTNFLNLPALGRRQPPYMVLRLCGDLCFCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSKPARAGTS 447
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: G7JVL6_MEDTR (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=G7JVL6_MEDTR) HSP 1 Score: 303 bits (777), Expect = 8.030e-96 Identity = 183/327 (55.96%), Postives = 206/327 (63.00%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQ----VVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANAS 954 SSRTA MGEQPNPW++L Q A SRHRGAKP RRC+ D ST++R+ITK DFR CST S SQA FCLCT IS EETF RLRYLLGG RP +T L+LS + + H K HL CA K ++Q Q + R+F + + ++ FRAGRNLPDKEFRYLRTVIVTAAVHRGF HQ +TNF NLPALGRRQPPY+VL+L GDLCFC LRPS P + S GI T PSTT F L LGPD P DEP GG LRFSGH ILT+V TQADIL SASS PA A S Sbjct: 83 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCD-------DGPSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLS-------------LGLYWH---KPPRKEAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRCSAQIVT--------PFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLNLPALGRRQPPYMVLRLCGDLCFCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSNPARAGTS 374
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A6L5DGZ5_9INSE (32 kDa thylakoid membrane protein (Fragment) n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DGZ5_9INSE) HSP 1 Score: 267 bits (682), Expect = 4.290e-79 Identity = 146/216 (67.59%), Postives = 156/216 (72.22%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL----DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR 636 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL D STQ+RQITKTDFR CSTCRSHSQAS CL TL +IS RSEETFVRLRY LGGDRPSQTARL+LS +++ + +RIFTDKSISPS S RQ PN YAFRAG+NLPDKEFRYLRTVIVTAAVH+GFSHQ R Sbjct: 414 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLLSLDDGLSTQHRQITKTDFRPCSTCRSHSQASLCLYTLDTISTRSEETFVRLRYRLGGDRPSQTARLRLSFDQIMI----------------------------------------QIRIFTDKSISPSPSPRQHPNHYAFRAGQNLPDKEFRYLRTVIVTAAVHQGFSHQLR 589
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A072UJ16_MEDTR (Signal anchor, putative n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UJ16_MEDTR) HSP 1 Score: 242 bits (617), Expect = 6.840e-73 Identity = 144/247 (58.30%), Postives = 159/247 (64.37%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCF 726 SSRTA MGEQPNPW++L Q A SRHRGAKP RRC+ D ST++R+ITK DFR CST S SQA FCLCT IS EETF RLRYLLGG RP +T L+LS + + H +VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF HQ +TNF NLPALGRRQPPY+VL+L GDLCF Sbjct: 105 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCD-------DGPSTRHRRITKVDFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLS-------------LGLYWH--------------------------KVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLNLPALGRRQPPYMVLRLCGDLCF 301
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A0R0I7Y0_SOYBN (Uncharacterized protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0I7Y0_SOYBN) HSP 1 Score: 241 bits (615), Expect = 5.030e-72 Identity = 170/388 (43.81%), Postives = 192/388 (49.48%), Query Frame = 1 Query: 19 MGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRRK*L-TNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASIYNRTLPYRLSNFY*FLF*SHSFGKLLSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPTSFTT**LFRGLS 1179 MGEQPNPW++L PQ A SRHRGAKP CE+LG+I LC+ L L + ET RL + G R S P + +S + V Q QVVRIFT+ SISPSLS RQCPN YAF A VIVT AVHRGF H+ L TNF +LPALGR QPPY+VL+L GD+CFC L PS PIK S I T PSTT F LG D P DEP G L FS H ILT+V+ T LPYR F+F HSFG+ LSPVH R + R VSYYA F+G LLL KPPGCL PTSF T FRGLS Sbjct: 1 MGEQPNPWNILQPQVAKSRHRGAKPSHPCEILGKIR----------------NLCTP-------PLPLGRLTPHRNYLPETIPRL--VGPGTRKS--------PKPIPGNSEASYGLSV---------------------------QVQVVRIFTNMSISPSLSPRQCPNHYAFHAD-------------VIVTVAVHRGFGHRIPCHLVTNFLDLPALGRCQPPYMVLRLCGDMCFCLLHPSSPIKGSTRIFTFCPSTTPFGRILGLDSPSVDEPYEGTLGFSRHWILTNVYGT-----------------------LPYR------FIFTPHSFGRSLSPVHLRHKSARSVSYYAFFQGWLLLGKPPGCLCTPTSFITERSFRGLS 286
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A077ZKY0_TRITR (Cell wall-associated hydrolase n=2 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZKY0_TRITR) HSP 1 Score: 223 bits (568), Expect = 3.380e-66 Identity = 134/231 (58.01%), Postives = 150/231 (64.94%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL---------DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRN----------QFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR 636 SSR A MGEQPNPWD L PQDA SRHRGAKPPRRC LLGEISL D S + +ITK DFR CSTCRS SQA CL TLR IS+ SE TF RLRY LGGDRPSQTA L LSP T+ G ++ ++ S L + + ++ + N +V IFT ISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAV+ GF+ R Sbjct: 35 SSRAALMGEQPNPWDRLQPQDATSRHRGAKPPRRCGLLGEISLLSPGFYPLSDGPSMRNHRITKPDFRPCSTCRSRSQAPLCLYTLRMISNHSEGTFGRLRYSLGGDRPSQTAHLTLSPT--TISG-AAPLSKLASR------LLRLLPILYMWYKHSISNCSKAPWGLSVLSRVTCIFTGTKISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVYWGFNSYLR 256
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: T2DPD7_PHAVU (Cell wall-associated hydrolase n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=T2DPD7_PHAVU) HSP 1 Score: 227 bits (579), Expect = 1.010e-65 Identity = 148/277 (53.43%), Postives = 170/277 (61.37%), Query Frame = 1 Query: 1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL----------DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVS---HLCCANKTRNQFQ----VVRIFTDKSISPS--------LSLRQCPNRYA-FRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQR-RK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCL-RPSL 747 SSRTA MGEQPNPW++L PQ A SRHRGAKP RRCELLG+ISL D ST++R+ITK DFR CST S SQA FCLCT IS EETF RLRYL GG RP +T L+LSP I + L L K H+ CA K ++Q Q + R+F + S S +SLR FRAGRNLPDKEFRYLRTVIVTAAVHRGF + R +TNF +LPALGRRQPPY+VL+L GDLCF + RP L Sbjct: 83 SSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLEQLLSVDDGPSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLWGGLRPIETVYLRLSPGPYW----HKVRIPTLPEWYLTDGLPPQKKAFFALHIRCAGKAQSQSQETVKLQRVFLSRCRSASSQTCLFHRVSLRDSAQIVTPFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPRHQVTNFLDLPALGRRQPPYMVLRLCGDLCFWQISRPGL 355
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: W9S092_9ROSA (Uncharacterized protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9S092_9ROSA) HSP 1 Score: 204 bits (520), Expect = 4.130e-60 Identity = 116/186 (62.37%), Postives = 124/186 (66.67%), Query Frame = 1 Query: 490 SISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCF-------------------------CCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASI 957 SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF HQ +TNF +LPALGRRQPPY+VL+L GDLCF C LRPS P + S GI T PSTT F L LGPD P DEP G LRFSGH ILT+V TQADIL SASST A A AS+ Sbjct: 2 SISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFWYPFVEGRSSFSWEYGIGYFSAVAPCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCRGTLRFSGHWILTNVCVTQADILASASSTTARAGASL 183
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI) HSP 1 Score: 200 bits (508), Expect = 3.810e-56 Identity = 113/170 (66.47%), Postives = 124/170 (72.94%), Query Frame = 1 Query: 463 QVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASI 957 QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF HQ +TNF +LPALGRRQPPY+VL+L GDLCF P + ++S Y +A GPD P DEP GG LRFSGH ILT+V TQADIL SASSTPA A AS+ Sbjct: 190 QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFWY--PFVEGRSSFS--WEYGMGYFSVVAPGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSTPARAGASL 351
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A1Y1NGI3_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NGI3_PHOPY) HSP 1 Score: 191 bits (484), Expect = 1.090e-55 Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 2 Query: 1139 PPPLPLSNYLGALAGDLGCFPLDNGAYPP*SYWLAIHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSSSADFSTSVSSDLHLVLPKLHPGHG 1483 PPPLPL+ LG LAG LGCFPLD+ AYPP S+WL + +VFRVC+DLV PAPKQCFTP + PLRLNTFRGEPASS FDW+FTPNH+SSADFSTSV +DLHLVLPKLHPGHG Sbjct: 4 PPPLPLNVDLGTLAGGLGCFPLDDEAYPPPSHWLCVRLVFRVCLDLVQISPPAPKQCFTPQILMLPLRLNTFRGEPASSGFDWYFTPNHTSSADFSTSVGADLHLVLPKLHPGHG 118 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10.3.1 >prot_L-elsbetiae_contig10.3.1 ID=prot_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp MGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTback to top mRNA from alignment at L-elsbetiae_contig10:6..1872+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10.3.1 ID=mRNA_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1867bp|location=Sequence derived from alignment at L-elsbetiae_contig10:6..1872+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10:6..1872+ >mRNA_L-elsbetiae_contig10.3.1 ID=mRNA_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10:6..1872+ (Laminarionema elsbetiae ELsaHSoW15)back to top |