mRNA_L-elsbetiae_contig10.3.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.3.1
Unique NamemRNA_L-elsbetiae_contig10.3.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: G7K1Z2_MEDTR (Signal anchor, putative n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K1Z2_MEDTR)

HSP 1 Score: 326 bits (836), Expect = 1.110e-103
Identity = 200/329 (60.79%), Postives = 219/329 (66.57%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SL----------KTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR-K*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANAS 954
            SSRTA MGEQPNPW++L  Q A SRHRGAKP RR +       D  STQ+R+ITK +FR CST RS SQA+FCL T   IS   +ETF RLRYLLG  RP +T  L+LS       G     IR++S   L   L          K      HL CA K     QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVH GF  +     +TNF NLPALGRRQPPY+VL+L GDLCFC LRPS P + S GI T  PSTT F L LGPD P  DEP GG LRFSGH ILT+V  TQADIL SASS PA A  S
Sbjct:  139 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRYD-------DGPSTQHRRITKAEFRPCSTGRSCSQATFCLYTRGPISVWPKETFARLRYLLGDLRP-ETVYLRLSL------GLYWHKIRILSL--LEWYLIDGSSPPPPRKEAFFAFHLSCAGKV----QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHWGFGRRLPCHRVTNFLNLPALGRRQPPYMVLRLCGDLCFCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSKPARAGTS 447          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: G7JVL6_MEDTR (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=G7JVL6_MEDTR)

HSP 1 Score: 303 bits (777), Expect = 8.030e-96
Identity = 183/327 (55.96%), Postives = 206/327 (63.00%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQ----VVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANAS 954
            SSRTA MGEQPNPW++L  Q A SRHRGAKP RRC+       D  ST++R+ITK DFR CST  S SQA FCLCT   IS   EETF RLRYLLGG RP +T  L+LS             + +  H       K      HL CA K ++Q Q    + R+F  +  +  ++         FRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF NLPALGRRQPPY+VL+L GDLCFC LRPS P + S GI T  PSTT F L LGPD P  DEP GG LRFSGH ILT+V  TQADIL SASS PA A  S
Sbjct:   83 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCD-------DGPSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLS-------------LGLYWH---KPPRKEAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRCSAQIVT--------PFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLNLPALGRRQPPYMVLRLCGDLCFCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSNPARAGTS 374          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A6L5DGZ5_9INSE (32 kDa thylakoid membrane protein (Fragment) n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DGZ5_9INSE)

HSP 1 Score: 267 bits (682), Expect = 4.290e-79
Identity = 146/216 (67.59%), Postives = 156/216 (72.22%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL----DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR 636
            SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL    D  STQ+RQITKTDFR CSTCRSHSQAS CL TL +IS RSEETFVRLRY LGGDRPSQTARL+LS +++ +                                         +RIFTDKSISPS S RQ PN YAFRAG+NLPDKEFRYLRTVIVTAAVH+GFSHQ R
Sbjct:  414 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLLSLDDGLSTQHRQITKTDFRPCSTCRSHSQASLCLYTLDTISTRSEETFVRLRYRLGGDRPSQTARLRLSFDQIMI----------------------------------------QIRIFTDKSISPSPSPRQHPNHYAFRAGQNLPDKEFRYLRTVIVTAAVHQGFSHQLR 589          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A072UJ16_MEDTR (Signal anchor, putative n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UJ16_MEDTR)

HSP 1 Score: 242 bits (617), Expect = 6.840e-73
Identity = 144/247 (58.30%), Postives = 159/247 (64.37%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCF 726
            SSRTA MGEQPNPW++L  Q A SRHRGAKP RRC+       D  ST++R+ITK DFR CST  S SQA FCLCT   IS   EETF RLRYLLGG RP +T  L+LS             + +  H                          +VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF NLPALGRRQPPY+VL+L GDLCF
Sbjct:  105 SSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCD-------DGPSTRHRRITKVDFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLS-------------LGLYWH--------------------------KVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLNLPALGRRQPPYMVLRLCGDLCF 301          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A0R0I7Y0_SOYBN (Uncharacterized protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0I7Y0_SOYBN)

HSP 1 Score: 241 bits (615), Expect = 5.030e-72
Identity = 170/388 (43.81%), Postives = 192/388 (49.48%), Query Frame = 1
Query:   19 MGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRNQFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRRK*L-TNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASIYNRTLPYRLSNFY*FLF*SHSFGKLLSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPTSFTT**LFRGLS 1179
            MGEQPNPW++L PQ A SRHRGAKP   CE+LG+I                  LC+           L  L    +   ET  RL  +  G R S        P  +     +S  + V                           Q QVVRIFT+ SISPSLS RQCPN YAF A              VIVT AVHRGF H+    L TNF +LPALGR QPPY+VL+L GD+CFC L PS PIK S  I T  PSTT F   LG D P  DEP  G L FS H ILT+V+ T                       LPYR      F+F  HSFG+ LSPVH R +  R VSYYA F+G LLL KPPGCL  PTSF T   FRGLS
Sbjct:    1 MGEQPNPWNILQPQVAKSRHRGAKPSHPCEILGKIR----------------NLCTP-------PLPLGRLTPHRNYLPETIPRL--VGPGTRKS--------PKPIPGNSEASYGLSV---------------------------QVQVVRIFTNMSISPSLSPRQCPNHYAFHAD-------------VIVTVAVHRGFGHRIPCHLVTNFLDLPALGRCQPPYMVLRLCGDMCFCLLHPSSPIKGSTRIFTFCPSTTPFGRILGLDSPSVDEPYEGTLGFSRHWILTNVYGT-----------------------LPYR------FIFTPHSFGRSLSPVHLRHKSARSVSYYAFFQGWLLLGKPPGCLCTPTSFITERSFRGLS 286          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A077ZKY0_TRITR (Cell wall-associated hydrolase n=2 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZKY0_TRITR)

HSP 1 Score: 223 bits (568), Expect = 3.380e-66
Identity = 134/231 (58.01%), Postives = 150/231 (64.94%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL---------DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVSHLCCANKTRN----------QFQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQRR 636
            SSR A MGEQPNPWD L PQDA SRHRGAKPPRRC LLGEISL         D  S +  +ITK DFR CSTCRS SQA  CL TLR IS+ SE TF RLRY LGGDRPSQTA L LSP   T+ G ++   ++ S       L   + + ++   +   N            +V  IFT   ISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAV+ GF+   R
Sbjct:   35 SSRAALMGEQPNPWDRLQPQDATSRHRGAKPPRRCGLLGEISLLSPGFYPLSDGPSMRNHRITKPDFRPCSTCRSRSQAPLCLYTLRMISNHSEGTFGRLRYSLGGDRPSQTAHLTLSPT--TISG-AAPLSKLASR------LLRLLPILYMWYKHSISNCSKAPWGLSVLSRVTCIFTGTKISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVYWGFNSYLR 256          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: T2DPD7_PHAVU (Cell wall-associated hydrolase n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=T2DPD7_PHAVU)

HSP 1 Score: 227 bits (579), Expect = 1.010e-65
Identity = 148/277 (53.43%), Postives = 170/277 (61.37%), Query Frame = 1
Query:    1 SSRTAFMGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISL----------DDFSTQYRQITKTDFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARLKLSPNRLTV*G*SSSFIRVVSH**LH*SLKTNIKVS---HLCCANKTRNQFQ----VVRIFTDKSISPS--------LSLRQCPNRYA-FRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQR-RK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCL-RPSL 747
            SSRTA MGEQPNPW++L PQ A SRHRGAKP RRCELLG+ISL          D  ST++R+ITK DFR CST  S SQA FCLCT   IS   EETF RLRYL GG RP +T  L+LSP            I  +    L   L    K     H+ CA K ++Q Q    + R+F  +  S S        +SLR        FRAGRNLPDKEFRYLRTVIVTAAVHRGF  +  R  +TNF +LPALGRRQPPY+VL+L GDLCF  + RP L
Sbjct:   83 SSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLEQLLSVDDGPSTRHRRITKADFRPCSTGGSCSQAPFCLCTRGPISVWPEETFARLRYLWGGLRPIETVYLRLSPGPYW----HKVRIPTLPEWYLTDGLPPQKKAFFALHIRCAGKAQSQSQETVKLQRVFLSRCRSASSQTCLFHRVSLRDSAQIVTPFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPRHQVTNFLDLPALGRRQPPYMVLRLCGDLCFWQISRPGL 355          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: W9S092_9ROSA (Uncharacterized protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9S092_9ROSA)

HSP 1 Score: 204 bits (520), Expect = 4.130e-60
Identity = 116/186 (62.37%), Postives = 124/186 (66.67%), Query Frame = 1
Query:  490 SISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCF-------------------------CCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASI 957
            SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCF                         C LRPS P + S GI T  PSTT F L LGPD P  DEP  G LRFSGH ILT+V  TQADIL SASST A A AS+
Sbjct:    2 SISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFWYPFVEGRSSFSWEYGIGYFSAVAPCLLRPSGPTRGSTGIFTCCPSTTPFGLILGPDSPSVDEPCRGTLRFSGHWILTNVCVTQADILASASSTTARAGASL 183          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI)

HSP 1 Score: 200 bits (508), Expect = 3.810e-56
Identity = 113/170 (66.47%), Postives = 124/170 (72.94%), Query Frame = 1
Query:  463 QVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFS-----HQRRK*LTNFFNLPALGRRQPPYVVLQLSGDLCFCCLRPSLPIKNSIGILTHYPSTTLFSLALGPDLPPADEPSGGNLRFSGHRILTHVFATQADILTSASSTPAYANASI 957
            QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF      HQ    +TNF +LPALGRRQPPY+VL+L GDLCF    P +  ++S      Y       +A GPD P  DEP GG LRFSGH ILT+V  TQADIL SASSTPA A AS+
Sbjct:  190 QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQ----VTNFLDLPALGRRQPPYMVLRLCGDLCFWY--PFVEGRSSFS--WEYGMGYFSVVAPGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSTPARAGASL 351          
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Match: A0A1Y1NGI3_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NGI3_PHOPY)

HSP 1 Score: 191 bits (484), Expect = 1.090e-55
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 2
Query: 1139 PPPLPLSNYLGALAGDLGCFPLDNGAYPP*SYWLAIHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSSSADFSTSVSSDLHLVLPKLHPGHG 1483
            PPPLPL+  LG LAG LGCFPLD+ AYPP S+WL + +VFRVC+DLV    PAPKQCFTP +   PLRLNTFRGEPASS FDW+FTPNH+SSADFSTSV +DLHLVLPKLHPGHG
Sbjct:    4 PPPLPLNVDLGTLAGGLGCFPLDDEAYPPPSHWLCVRLVFRVCLDLVQISPPAPKQCFTPQILMLPLRLNTFRGEPASSGFDWYFTPNHTSSADFSTSVGADLHLVLPKLHPGHG 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G7K1Z2_MEDTR1.110e-10360.79Signal anchor, putative n=1 Tax=Medicago truncatul... [more]
G7JVL6_MEDTR8.030e-9655.96Uncharacterized protein n=2 Tax=Magnoliopsida TaxI... [more]
A0A6L5DGZ5_9INSE4.290e-7967.5932 kDa thylakoid membrane protein (Fragment) n=1 T... [more]
A0A072UJ16_MEDTR6.840e-7358.30Signal anchor, putative n=1 Tax=Medicago truncatul... [more]
A0A0R0I7Y0_SOYBN5.030e-7243.81Uncharacterized protein n=2 Tax=Glycine subgen. So... [more]
A0A077ZKY0_TRITR3.380e-6658.01Cell wall-associated hydrolase n=2 Tax=Trichuris t... [more]
T2DPD7_PHAVU1.010e-6553.43Cell wall-associated hydrolase n=1 Tax=Phaseolus v... [more]
W9S092_9ROSA4.130e-6062.37Uncharacterized protein n=1 Tax=Morus notabilis Ta... [more]
A0A5N5KVY8_9ROSI3.810e-5666.47Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A1Y1NGI3_PHOPY1.090e-5575.65Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:6..1872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue8.9e-24
Seed eggNOG ortholog3880.AES85855
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cell wall-associated hydrolase
EggNOG OGs2E30T@1,2SA69@2759,37XUE@33090,3GMF3@35493,4JVFX@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons4
Model size1483
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.3.1prot_L-elsbetiae_contig10.3.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 24..384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815231.3941138-UTR-L-elsbetiae_contig10:5..231622815231.3941138-UTR-L-elsbetiae_contig10:5..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 6..23 +
1691682783.1337855-UTR-L-elsbetiae_contig10:5..231691682783.1337855-UTR-L-elsbetiae_contig10:5..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 6..23 +
1622815231.4336054-UTR-L-elsbetiae_contig10:384..5011622815231.4336054-UTR-L-elsbetiae_contig10:384..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 385..501 +
1691682783.286128-UTR-L-elsbetiae_contig10:384..5011691682783.286128-UTR-L-elsbetiae_contig10:384..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 385..501 +
1622815231.4447057-UTR-L-elsbetiae_contig10:542..8051622815231.4447057-UTR-L-elsbetiae_contig10:542..805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 543..805 +
1691682783.3203087-UTR-L-elsbetiae_contig10:542..8051691682783.3203087-UTR-L-elsbetiae_contig10:542..805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 543..805 +
1622815231.454591-UTR-L-elsbetiae_contig10:1117..18721622815231.454591-UTR-L-elsbetiae_contig10:1117..1872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 1118..1872 +
1691682783.352062-UTR-L-elsbetiae_contig10:1117..18721691682783.352062-UTR-L-elsbetiae_contig10:1117..1872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 1118..1872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815231.4099889-CDS-L-elsbetiae_contig10:23..1331622815231.4099889-CDS-L-elsbetiae_contig10:23..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 24..133 +
1691682783.197777-CDS-L-elsbetiae_contig10:23..1331691682783.197777-CDS-L-elsbetiae_contig10:23..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 24..133 +
1622815231.4222925-CDS-L-elsbetiae_contig10:164..3841622815231.4222925-CDS-L-elsbetiae_contig10:164..384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 165..384 +
1691682783.245503-CDS-L-elsbetiae_contig10:164..3841691682783.245503-CDS-L-elsbetiae_contig10:164..384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 165..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.3.1

>prot_L-elsbetiae_contig10.3.1 ID=prot_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MGEQPNPWDVLPPQDAMSRHRGAKPPRRCELLGEISLDDFSTQYRQITKT
DFRLCSTCRSHSQASFCLCTLRSISDRSEETFVRLRYLLGGDRPSQTARL
KLSPNRLTV*
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mRNA from alignment at L-elsbetiae_contig10:6..1872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.3.1 ID=mRNA_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1867bp|location=Sequence derived from alignment at L-elsbetiae_contig10:6..1872+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACGTACT ACCGCCCCAGGATGCGATGAGCCGACATCGAGGTGCCAAACCTCCCCGTC GATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTTA TCCGTTGAGTGACGACTTTTCCACTCAATATCGCCAGATCACTAAGACCG ACTTTCGTCTCTGTTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTTTGC CTTTGCACTCTACGATCGATTTCTGACCGATCTGAGGAAACCTTTGTACG CCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGCCTGA AACTGTCCCCTAACCGGCTAACGGTATAGGGTTAGAGTTCTAGTTTTATT AGAGTGGTATCTCACTGATGACTCCATTAATCCCTTAAGACTAACATCAA AGTCTCCCACCTATGCTGCGCAAATAAAACCCGAAACCAATTCCAAGTTA CAGTAAAGCTTCATAGGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCT TCACAGACAAGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGTCCAAAT CGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA CCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCATC AGCGTCGTAAATAACTAACCAACTTCTTTAACCTTCCGGCACTGGGCAGG CGTCAGCCCCCATACGTTGTCTTACAACTTAGCGGAGACCTGTGTTTTTG GTAAACAGTCGCTTGGACCTTGTTATTGCAACCTAATAGGTACCCCTTCT CCCGAAGTTACAGGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTATCTCG CGCCCTTTGGTATACTCTACCAACCCACCTGTGTCGGTTTAGAGTACAGG TATTCTTTATTTATGACAGTGCAAGCTTTTCTTGGAAGCATAACATCAAC TGCTTTAGATAATGCACACATTATTCCGTATTCATAACTTAGCTCAAAGT ATTTTCTCTACTTCTCAACACCTCGTATATTTAAACCAATAACCAATACT TGGCCAGTTTAGCTGTCTTCGTCCCTCGTTGCCAATAAAGAATAGTATAG GAATATTAACCCATTATCCATCGACTACGCTTTTCAGCCTCGCCTTAGGT CCTGACTTACCCCCCGCGGACGAGCCTTCCGGAGGAAACCTTAGGTTTTC AGGGCATCGGATTCTCACCCATGTTTTCGCTACTCAAGCCGACATTCTCA CTTCTGCTTCGTCCACGCCCGCTTACGCTAACGCTTCAATCTACAACAGA ACGCTCCCCTACCGATTATCTAATTTTTATTAGTTTCTTTTTTAATCTCA CAGCTTCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGATTACTC GACCAGTGAGCTATTACGCACTCTTTAAAGGATTGCTGCTTCTAAGCAAA CCTCCTGGTTGTTTAAGTCTTCCCACCTCCTTTACCACTTAGTAATTATT TAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTTGACAATGGAGCT TATCCCCCATAGTCTTACTGGTTAGCTATACATGTAGTATTCAGAGTTTG CATCGATTTGGTACCGAATTACCAGCCCGCACCGAAGCAGTGCTTTACCC CTACATTATAACACTAACCGCTGCGCCTAAACACATTTCGGGGAGAACCA GCTAGCTCCGAATTCGATTGGCATTTCACCCCTAACCACAGCTCATCTGC TGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTATTACCTAAGC TTCATCCTGGCCATGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:6..1872+

>mRNA_L-elsbetiae_contig10.3.1 ID=mRNA_L-elsbetiae_contig10.3.1|Name=mRNA_L-elsbetiae_contig10.3.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10:6..1872+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAACAGCCCAACCCTTGGGACGTACTACCGCCCCAGGATGCGAT
GAGCCGACATCGAGGTGCCAAACCTCCCCGTCGATGTGAACTCTTGGGGG
AGATCAGCCTATGGGCGAACAGCCCAACCCTTGGGACGTACTACCGCCCC
AGGATGCGATGAGCCGACATCGAGGTGCCAAACCTCCCCGTCGATGTGAA
CTCTTGGGGGAGATCAGCCTTGACGACTTTTCCACTCAATATCGCCAGAT
CACTAAGACCGACTTTCGTCTCTGTTCGACTTGTAGGTCTCACAGTCAAG
CTTCCTTTTGCCTTTGCACTCTACGATCGATTTCTGACCGATCTGAGGAA
ACCTTTGTACGCCTCCGTTACCTTTTAGGAGGCGACCGCCCCAGTCAAAC
TGCCCGCCTGAAACTGTCCCCTAACCGGCTAACGGTATAGTGACGACTTT
TCCACTCAATATCGCCAGATCACTAAGACCGACTTTCGTCTCTGTTCGAC
TTGTAGGTCTCACAGTCAAGCTTCCTTTTGCCTTTGCACTCTACGATCGA
TTTCTGACCGATCTGAGGAAACCTTTGTACGCCTCCGTTACCTTTTAGGA
GGCGACCGCCCCAGTCAAACTGCCCGCCTGAAACTGTCCCCTAACCGGCT
AACGGTATAG
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