mRNA_L-elsbetiae_contig13901.2934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13901.2934.1
Unique NamemRNA_L-elsbetiae_contig13901.2934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Match: D8LDN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-16
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  155 GFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCGSVPVSLFVWERYRSRELERLVEEFPPV 382
             FC + +A  LL +MC++LLTN+AAQNMA+WTF G++++GAI+GLVLC  VP+SLFVW+  +S +L R + E P V
Sbjct:  437 SFCFV-LAAALLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLV 511
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BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Match: A0A6H5KRC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 8.340e-13
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  143 RGQCGFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCGSVPVSLFVWERYRSRELERLVEEFPPVD 385
            R    FCL+ +A V+L  MCV+LLTN+AAQ+MA WTF G+ +IGA+VGL+L   VP+S F W    S +L RLV++ P  +
Sbjct:  326 RSCASFCLV-LAAVMLVTMCVALLTNEAAQHMAEWTFEGDYRIGAVVGLMLRSCVPLS-FAWNYRNSNKLFRLVKDCPVAE 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDN9_ECTSI1.390e-1655.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRC3_9PHAE8.340e-1350.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13901contigL-elsbetiae_contig13901:1414..2324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size637
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13901.2934.1prot_L-elsbetiae_contig13901.2934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13901 1415..2099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.7719107-UTR-L-elsbetiae_contig13901:1413..14141622815546.7719107-UTR-L-elsbetiae_contig13901:1413..1414Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13901 1414..1414 +
1691682951.9735858-UTR-L-elsbetiae_contig13901:1413..14141691682951.9735858-UTR-L-elsbetiae_contig13901:1413..1414Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13901 1414..1414 +
1622815546.8190644-UTR-L-elsbetiae_contig13901:2099..23241622815546.8190644-UTR-L-elsbetiae_contig13901:2099..2324Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13901 2100..2324 +
1691682952.010028-UTR-L-elsbetiae_contig13901:2099..23241691682952.010028-UTR-L-elsbetiae_contig13901:2099..2324Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13901 2100..2324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.7923748-CDS-L-elsbetiae_contig13901:1414..14611622815546.7923748-CDS-L-elsbetiae_contig13901:1414..1461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13901 1415..1461 +
1691682951.9841182-CDS-L-elsbetiae_contig13901:1414..14611691682951.9841182-CDS-L-elsbetiae_contig13901:1414..1461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13901 1415..1461 +
1622815546.8069098-CDS-L-elsbetiae_contig13901:1735..20991622815546.8069098-CDS-L-elsbetiae_contig13901:1735..2099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13901 1736..2099 +
1691682951.9940383-CDS-L-elsbetiae_contig13901:1735..20991691682951.9940383-CDS-L-elsbetiae_contig13901:1735..2099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13901 1736..2099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13901.2934.1

>prot_L-elsbetiae_contig13901.2934.1 ID=prot_L-elsbetiae_contig13901.2934.1|Name=mRNA_L-elsbetiae_contig13901.2934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MEYSGGFCADWPAGKRCCLWASFARTGSPASTRSFVCPVHGSLCRQNRGQ
CGFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCG
SVPVSLFVWERYRSRELERLVEEFPPVDPELDRARL*
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mRNA from alignment at L-elsbetiae_contig13901:1414..2324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13901.2934.1 ID=mRNA_L-elsbetiae_contig13901.2934.1|Name=mRNA_L-elsbetiae_contig13901.2934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=911bp|location=Sequence derived from alignment at L-elsbetiae_contig13901:1414..2324+ (Laminarionema elsbetiae ELsaHSoW15)
GATGGAATACTCCGGGGGTTTTTGCGCCGACTGGCCAGCGGGCAAGAGGT
TCGTTGTCTTGGCGAATGATGAGAGCGAGCCCCTTTTGCGCCCGGATACT
CCTCTTCATGCCCAGCTGCATGGCGATGCAGAAGGTGTTGAAACGTAACC
ATAGACTATGTGCCGCCAAAATCTCTTATACCGGAAGCTAAAGTGTAGTC
CACAGCATAAAAAACGATGTACTCTGTAAATGCTTAGACTGAAGCTGCTG
AATGCCCGTGGCGCCAACAAGTAAGTCTCGTTTCCTGCCTGAGCACATTT
GCGTCCGTCGTCTTGCGTTTAGGTGCTGCTTGTGGGCGTCCTTCGCGAGG
ACCGGGTCACCTGCATCGACGAGGAGCTTCGTCTGCCCTGTCCACGGAAG
CCTCTGTCGTCAGAATCGAGGCCAGTGCGGCTTTTGCCTCCTCTTTGTCG
CCACCGTGTTGCTCGCCCTCATGTGCGTCTCCCTCTTGACAAACAAAGCC
GCCCAAAACATGGCGTCCTGGACGTTCCACGGTAATAACAAGATCGGCGC
GATCGTGGGTCTGGTGCTGTGTGGCTCAGTGCCTGTGTCGCTTTTCGTGT
GGGAACGCTATAGAAGTCGAGAGTTAGAGCGACTGGTGGAAGAGTTCCCC
CCTGTCGACCCTGAGTTGGATCGGGCACGTCTGTAGAGCCTGCGGTGCAA
GGAAGGGGCACGATATTCGCAGGGCCAGTACTGACGCCAGTTTTGTGCGT
TTCGCAGAGACGGCAACCGCTGCCGGTGGGTTGTTGGTTTCGTTTTCACA
ACTTCTAGTGTTCGTATTTTTCGCCTCTGGGAGCGAAGCCCCGAGGCTTG
TCAGGCAGCGCGACTGACATGTTCTGAGCAGCTGCAAGGGACCAATTGAC
TCTACCCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13901:1414..2324+

>mRNA_L-elsbetiae_contig13901.2934.1 ID=mRNA_L-elsbetiae_contig13901.2934.1|Name=mRNA_L-elsbetiae_contig13901.2934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig13901:1414..2324+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATACTCCGGGGGTTTTTGCGCCGACTGGCCAGCGGGCAAGAGATG
GAATACTCCGGGGGTTTTTGCGCCGACTGGCCAGCGGGCAAGAGGTGCTG
CTTGTGGGCGTCCTTCGCGAGGACCGGGTCACCTGCATCGACGAGGAGCT
TCGTCTGCCCTGTCCACGGAAGCCTCTGTCGTCAGAATCGAGGCCAGTGC
GGCTTTTGCCTCCTCTTTGTCGCCACCGTGTTGCTCGCCCTCATGTGCGT
CTCCCTCTTGACAAACAAAGCCGCCCAAAACATGGCGTCCTGGACGTTCC
ACGGTAATAACAAGATCGGCGCGATCGTGGGTCTGGTGCTGTGTGGCTCA
GTGCCTGTGTCGCTTTTCGTGTGGGAACGCTATAGAAGTCGAGAGTTAGA
GCGACTGGTGGAAGAGTTCCCCCCTGTCGACCCTGAGTTGGATCGGGCAC
GTCTGTAGGTGCTGCTTGTGGGCGTCCTTCGCGAGGACCGGGTCACCTGC
ATCGACGAGGAGCTTCGTCTGCCCTGTCCACGGAAGCCTCTGTCGTCAGA
ATCGAGGCCAGTGCGGCTTTTGCCTCCTCTTTGTCGCCACCGTGTTGCTC
GCCCTCATGTGCGTCTCCCTCTTGACAAACAAAGCCGCCCAAAACATGGC
GTCCTGGACGTTCCACGGTAATAACAAGATCGGCGCGATCGTGGGTCTGG
TGCTGTGTGGCTCAGTGCCTGTGTCGCTTTTCGTGTGGGAACGCTATAGA
AGTCGAGAGTTAGAGCGACTGGTGGAAGAGTTCCCCCCTGTCGACCCTGA
GTTGGATCGGGCACGTCTGTAG
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