prot_L-elsbetiae_contig13901.2934.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13901.2934.1
Unique Name	prot_L-elsbetiae_contig13901.2934.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	137

Homology

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BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Match: D8LDN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-17
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0

Query:   52 GFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCGSVPVSLFVWERYRSRELERLVEEFPPVDPELDRA 134
             FC + +A  LL +MC++LLTN+AAQNMA+WTF G++++GAI+GLVLC  VP+SLFVW+  +S +L R + E P V  E DR 
Sbjct:  437 SFCFV-LAAALLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLV-AESDRV 517

[Close]

BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Match: A0A6H5KRC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.040e-13
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0

Query:   48 RGQCGFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCGSVPVSLFVWERYRSRELERLVEEFPPVD 128
            R    FCL+ +A V+L  MCV+LLTN+AAQ+MA WTF G+ +IGA+VGL+L   VP+S F W    S +L RLV++ P  +
Sbjct:  326 RSCASFCLV-LAAVMLVTMCVALLTNEAAQHMAEWTFEGDYRIGAVVGLMLRSCVPLS-FAWNYRNSNKLFRLVKDCPVAE 404

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13901.2934.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LDN9_ECTSI	1.060e-17	54.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KRC3_9PHAE	1.040e-13	50.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..50
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..71
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 72..90
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 91..109
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 110..136
None	No IPR available	TMHMM	TMhelix		coord: 90..109
None	No IPR available	TMHMM	TMhelix		coord: 53..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13901	contig	L-elsbetiae_contig13901:1415..2099 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13901.2934.1	mRNA_L-elsbetiae_contig13901.2934.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13901 1414..2324 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13901.2934.1 ID=prot_L-elsbetiae_contig13901.2934.1|Name=mRNA_L-elsbetiae_contig13901.2934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MEYSGGFCADWPAGKRCCLWASFARTGSPASTRSFVCPVHGSLCRQNRGQ
CGFCLLFVATVLLALMCVSLLTNKAAQNMASWTFHGNNKIGAIVGLVLCG
SVPVSLFVWERYRSRELERLVEEFPPVDPELDRARL*