prot_L-elsbetiae_contig10224.273.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10224.273.1
Unique Name	prot_L-elsbetiae_contig10224.273.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	112

Homology

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BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.540e-43
Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ G SERDGQTL  +TRCL+KDG FP S+W +L+ TA Y++NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   20 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 123

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BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.080e-43
Identity = 71/104 (68.27%), Postives = 81/104 (77.88%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVS RDGQ+L  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPH  L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   68 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATPYSKLHNKSPDLSGLRVIGARAF 171

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BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.420e-43
Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG +F   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGE++ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:  131 GENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 234

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.470e-42
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+R K  D+SGLRVIGARAF
Sbjct:  501 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAF 604

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.440e-42
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   43 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 146

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.500e-42
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:  177 GENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 280

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.700e-41
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:  177 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 280

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5JRZ5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.790e-41
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 0

Query:    7 NTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            NTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   44 NTGSEFRDYCKKSAIKLEYAATNTPQQTGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 145

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.240e-41
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:  177 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 280

[Close]

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.250e-41
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    5 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 108
            GENTG EF   C  SAI +EYAATNTPQQ GVSERDGQTL  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:  177 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 280

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KQ40_9PHAE	3.540e-43	68.27	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KV62_9PHAE	5.080e-43	68.27	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KF63_9PHAE	7.420e-43	69.23	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KVF6_9PHAE	1.470e-42	72.12	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K5H2_9PHAE	2.440e-42	71.15	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	6.500e-42	71.15	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5K500_9PHAE	1.700e-41	71.15	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRZ5_9PHAE	1.790e-41	70.59	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	2.240e-41	71.15	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	2.250e-41	71.15	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..104 e-value: 2.7E-17 score: 64.6
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 5..110
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..110
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..94 score: 10.607
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10224	contig	L-elsbetiae_contig10224:3891..4226 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10224.273.1	mRNA_L-elsbetiae_contig10224.273.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10224 3517..4226 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10224.273.1 ID=prot_L-elsbetiae_contig10224.273.1|Name=mRNA_L-elsbetiae_contig10224.273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRQRGENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRC
LMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGL
RVIGARAFARKI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf