mRNA_L-elsbetiae_contig10224.273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10224.273.1
Unique NamemRNA_L-elsbetiae_contig10224.273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 8.490e-45
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 8.030e-42
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.830e-41
Identity = 80/143 (55.94%), Postives = 96/143 (67.13%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPGKSSPLY 420
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G     Y
Sbjct:  386 WHRRLGHLNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNY 528
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.970e-41
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 557
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 4.270e-41
Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 3 
Query:  387 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 698
            GENTG EF   C  SAI +EYAATNTPQQ G SERDGQTL  +TRCL+KDG FP S+W +L+ TA Y++NRSPHS L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   20 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAF 123
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.850e-41
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.840e-41
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.060e-41
Identity = 71/104 (68.27%), Postives = 81/104 (77.88%), Query Frame = 3 
Query:  387 GENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRCLMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGLRVIGARAF 698
            GENTG EF   C  SAI +EYAATNTPQQ GVS RDGQ+L  +TRCL+KDG FP S+WGEL+ TA Y+ NRSPH  L GATP+SK+  K  D+SGLRVIGARAF
Sbjct:   68 GENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATPYSKLHNKSPDLSGLRVIGARAF 171
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 7.120e-41
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
[Close]
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 7.210e-41
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 WHRRPGHKNPKSMDQLRKAEGTGVDYPDTTSACDICAISKSKQQAHPKATTRTTTRPIQLVHTDNMGPFTPAAK---GRFRYACNFTDDFSRMKEVYLLKDKTETALAPYTYNIHVAAEQGYRIERIRCDRGARTPG 402
            WHRR GH N +S+D LRK  GTGVDY D+ S C +C I+K KQ  HPK +TR  +RP QLV  DNMGP  P AK   G F YAC  TDD+++MKEVYLL+ K++T  A +TYN+ VAA  GYRIE IRCD+G    G
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10224.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ34_9PHAE8.490e-4557.66Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCM0_9PHAE8.030e-4257.66Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5J8P7_9PHAE2.830e-4155.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT84_9PHAE2.970e-4157.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ40_9PHAE4.270e-4168.27Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K500_9PHAE4.850e-4157.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE5.840e-4157.66Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KV62_9PHAE6.060e-4168.27Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJR8_9PHAE7.120e-4157.66Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE7.210e-4157.66Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10224contigL-elsbetiae_contig10224:3517..4226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.9
Seed ortholog evalue4.1e-16
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size710
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.076467-UTR-L-elsbetiae_contig10224:3516..38901622815253.076467-UTR-L-elsbetiae_contig10224:3516..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10224 3517..3890 +
1691682797.6349335-UTR-L-elsbetiae_contig10224:3516..38901691682797.6349335-UTR-L-elsbetiae_contig10224:3516..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10224 3517..3890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.0880864-CDS-L-elsbetiae_contig10224:3890..42261622815253.0880864-CDS-L-elsbetiae_contig10224:3890..4226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10224 3891..4226 +
1691682797.6453621-CDS-L-elsbetiae_contig10224:3890..42261691682797.6453621-CDS-L-elsbetiae_contig10224:3890..4226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10224 3891..4226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10224.273.1prot_L-elsbetiae_contig10224.273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10224 3891..4226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10224.273.1

>prot_L-elsbetiae_contig10224.273.1 ID=prot_L-elsbetiae_contig10224.273.1|Name=mRNA_L-elsbetiae_contig10224.273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRQRGENTGEEFTTLCTASAITIEYAATNTPQQNGVSERDGQTLTTMTRC
LMKDGHFPGSLWGELLPTAVYMYNRSPHSGLVGATPFSKMRGKDADMSGL
RVIGARAFARKI
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mRNA from alignment at L-elsbetiae_contig10224:3517..4226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10224.273.1 ID=mRNA_L-elsbetiae_contig10224.273.1|Name=mRNA_L-elsbetiae_contig10224.273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=710bp|location=Sequence derived from alignment at L-elsbetiae_contig10224:3517..4226+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCACCGGCGACCCGGTCACAAGAACCCCAAGAGCATGGACCAACTTCG
TAAAGCAGAAGGCACCGGAGTTGACTACCCAGACACCACGTCAGCCTGCG
ACATCTGCGCCATCAGCAAAAGCAAGCAACAAGCCCATCCGAAGGCCACA
ACGCGTACAACTACCAGGCCGATACAGCTGGTGCATACGGACAACATGGG
GCCCTTCACCCCGGCAGCCAAGGGAAGATTCCGCTACGCCTGCAATTTCA
CGGACGACTTCTCGCGGATGAAGGAAGTCTACCTGCTCAAAGACAAGACG
GAGACAGCCCTAGCGCCCTACACCTACAACATACACGTAGCCGCCGAGCA
GGGATACCGCATCGAACGCATTCGATGCGACAGAGGGGCGAGAACACCGG
GGAAGAGTTCACCACTCTATGCACCGCATCCGCCATCACGATCGAGTACG
CCGCGACTAACACTCCCCAGCAAAACGGAGTGTCAGAGCGAGACGGCCAG
ACCCTCACCACGATGACCAGATGCCTGATGAAAGACGGACACTTTCCGGG
GTCCCTGTGGGGCGAACTGCTTCCCACAGCAGTGTACATGTACAACAGGT
CACCACATTCGGGACTGGTAGGAGCTACTCCATTCTCCAAAATGCGCGGC
AAAGACGCCGACATGTCCGGACTCCGAGTGATTGGCGCGAGGGCGTTCGC
ACGAAAGATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10224:3517..4226+

>mRNA_L-elsbetiae_contig10224.273.1 ID=mRNA_L-elsbetiae_contig10224.273.1|Name=mRNA_L-elsbetiae_contig10224.273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig10224:3517..4226+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGACAGAGGGGCGAGAACACCGGGGAAGAGTTCACCACTCTATGCAC
CGCATCCGCCATCACGATCGAGTACGCCGCGACTAACACTCCCCAGCAAA
ACGGAGTGTCAGAGCGAGACGGCCAGACCCTCACCACGATGACCAGATGC
CTGATGAAAGACGGACACTTTCCGGGGTCCCTGTGGGGCGAACTGCTTCC
CACAGCAGTGTACATGTACAACAGGTCACCACATTCGGGACTGGTAGGAG
CTACTCCATTCTCCAAAATGCGCGGCAAAGACGCCGACATGTCCGGACTC
CGAGTGATTGGCGCGAGGGCGTTCGCACGAAAGATAATGCGACAGAGGGG
CGAGAACACCGGGGAAGAGTTCACCACTCTATGCACCGCATCCGCCATCA
CGATCGAGTACGCCGCGACTAACACTCCCCAGCAAAACGGAGTGTCAGAG
CGAGACGGCCAGACCCTCACCACGATGACCAGATGCCTGATGAAAGACGG
ACACTTTCCGGGGTCCCTGTGGGGCGAACTGCTTCCCACAGCAGTGTACA
TGTACAACAGGTCACCACATTCGGGACTGGTAGGAGCTACTCCATTCTCC
AAAATGCGCGGCAAAGACGCCGACATGTCCGGACTCCGAGTGATTGGCGC
GAGGGCGTTCGCACGAAAGATA
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