mRNA_L-elsbetiae_contig13573.2720.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13573.2720.1
Unique NamemRNA_L-elsbetiae_contig13573.2720.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13573.2720.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 7.990e-61
Identity = 122/177 (68.93%), Postives = 131/177 (74.01%), Query Frame = 1 
Query:    4 AAVVLTLEGEVGEIIQGAPERVGWMAGAGIRGTFCKDGTDGKIKGSWSAQAAATALEPLQPGGMRVNVGLLPDRLLAAEGNGLAGGSSRSSG---------GRDLAAGPAMGSSCRSVWVTGGGND-SGLNAGGRGFSALNSGLQPPSGPLIATVEVHPEPPSDALFPDPITWEPRT 504
            A+ VLTLEG+VGE+ QGAPERVGW AGA IRGTFCKDGTDG IKG WSA+A ATALEPLQPGGMR+NVGLLPDRLLAAEGN   G                G DL    AMGSSCRSVWV GG     GL+A GRGFSALN+GL   SGPLIATVEVHPEPPS A FPDP +W+  T
Sbjct: 5814 ASAVLTLEGKVGEVFQGAPERVGWAAGAEIRGTFCKDGTDGTIKGKWSAKAVATALEPLQPGGMRLNVGLLPDRLLAAEGNNPGGXXXXXXXXXXXXXXXXGTDL----AMGSSCRSVWVVGGXXXXGGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAAT 5986
[Close]
BLAST of mRNA_L-elsbetiae_contig13573.2720.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 2.110e-58
Identity = 119/173 (68.79%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:    4 AAVVLTLEGEVGEIIQGAPERVGWMAGAGIRGTFCKDGTDGKIKGSWSAQAAATALEPLQPGGMRVNVGLLPDRLLAAEGNGLAGGSS----RSSGGRDLA-AGPAMGSSCRSVWVTGGGNDSGL-NAGGRGFSALNSGLQPPSGPLIATVEVHPEPPSDALFPDPITWEPRT 504
            A+ V TLEG+VGE+ QGAPERVGW AGA IRGTFCKDGTDG IKG WSA+AAATALEPLQPGGMR+NVGLLPDRLLAAEGN   G       RSS         P MGSSCRSVWV G        +A GRGFSALN+GL   SGPLIATVEVHPEPPS A FPDP +W+  T
Sbjct: 6331 ASAVFTLEGKVGEVFQGAPERVGWAAGAEIRGTFCKDGTDGTIKGKWSARAAATALEPLQPGGMRLNVGLLPDRLLAAEGNNPGGXXXXXXXRSSXXXXXXXTDPGMGSSCRSVWVVGXXXXXXXXSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDEAT 6503
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13573.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI7.990e-6168.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE2.110e-5868.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13573contigL-elsbetiae_contig13573:927..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.0712726-CDS-L-elsbetiae_contig13573:926..12491622815525.0712726-CDS-L-elsbetiae_contig13573:926..1249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 927..1249 +
1691682940.0413723-CDS-L-elsbetiae_contig13573:926..12491691682940.0413723-CDS-L-elsbetiae_contig13573:926..1249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 927..1249 +
1622815525.0832064-CDS-L-elsbetiae_contig13573:1659..18911622815525.0832064-CDS-L-elsbetiae_contig13573:1659..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 1660..1891 +
1691682940.0573258-CDS-L-elsbetiae_contig13573:1659..18911691682940.0573258-CDS-L-elsbetiae_contig13573:1659..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13573 1660..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13573.2720.1prot_L-elsbetiae_contig13573.2720.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13573 927..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13573.2720.1

>prot_L-elsbetiae_contig13573.2720.1 ID=prot_L-elsbetiae_contig13573.2720.1|Name=mRNA_L-elsbetiae_contig13573.2720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
VAAVVLTLEGEVGEIIQGAPERVGWMAGAGIRGTFCKDGTDGKIKGSWSA
QAAATALEPLQPGGMRVNVGLLPDRLLAAEGNGLAGGSSRSSGGRDLAAG
PAMGSSCRSVWVTGGGNDSGLNAGGRGFSALNSGLQPPSGPLIATVEVHP
EPPSDALFPDPITWEPRTTAGTVATIAEEGSVAAA
back to top

mRNA from alignment at L-elsbetiae_contig13573:927..1891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13573.2720.1 ID=mRNA_L-elsbetiae_contig13573.2720.1|Name=mRNA_L-elsbetiae_contig13573.2720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=965bp|location=Sequence derived from alignment at L-elsbetiae_contig13573:927..1891+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCCGCTGTCGTGCTGACTCTGGAGGGCGAGGTCGGGGAAATAATCCA
GGGAGCGCCGGAGCGGGTGGGCTGGATGGCCGGGGCGGGGATCCGCGGGA
CGTTCTGCAAGGACGGCACCGATGGAAAGATCAAGGGCTCGTGGTCCGCG
CAGGCGGCCGCGACAGCCCTGGAGCCGCTCCAGCCCGGCGGCATGCGCGT
GAATGTGGGCCTGCTCCCCGACCGCCTGCTGGCGGCGGAGGGGAACGGCC
TCGCGGGGGGGTCGTCGCGGTCTTCGGGGGGGCGTGACTTGGCGGCGGGC
CCCGCCATGGGCTCGTCGTGCAGGTGACGAGAGCGCTCACCACGGAACCG
ATAGTTTACTCACGTAGAAGAGCATGTTTAGAAGCACGTGCAAGGGAAGG
CTGGGCGGCGGCAGGCACTGAATATCAGGGGCAGGCACCCGGTTGTGGTG
CCGAAGATGTTGATGTCTGTCTGTATCTCATGGCAGGTGCTGATGGCCTG
CGGGTTTCGTGGTGTGCTTTTGTTGGAGGCGATAGCCCCGGTGGATGCTC
TCACCTACCTCTCCCAGGCTAAGCGTGCGCGCTCTCCTGGCTAGAGATAA
AAGTGGTAGACTGCATGCCTGTCTGCCTGCCTCCCTTGATGTTTCCGGAT
GCCAAGATAAAAATGTGCCCCTTCCCCTCCCCCCCCCCGTTCGTGCTGCT
CGTCCTTTTATTAAACATGGGCGTACGGAGTAGATCAGTCTGGGTTACCG
GCGGAGGGAACGACAGCGGGCTCAACGCGGGGGGGCGCGGCTTCTCCGCG
CTCAACTCGGGGCTCCAGCCGCCGTCAGGCCCGCTCATCGCCACGGTGGA
GGTTCACCCGGAGCCGCCGTCGGACGCCTTGTTCCCCGATCCCATCACCT
GGGAGCCGCGGACGACAGCGGGAACGGTGGCGACGATCGCGGAGGAGGGA
TCTGTGGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13573:927..1891+

>mRNA_L-elsbetiae_contig13573.2720.1 ID=mRNA_L-elsbetiae_contig13573.2720.1|Name=mRNA_L-elsbetiae_contig13573.2720.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig13573:927..1891+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCCGCTGTCGTGCTGACTCTGGAGGGCGAGGTCGGGGAAATAATCCA
GGGAGCGCCGGAGCGGGTGGGCTGGATGGCCGGGGCGGGGATCCGCGGGA
CGTTCTGCAAGGACGGCACCGATGGAAAGATCAAGGGCTCGTGGTCCGCG
CAGGCGGCCGCGACAGCCCTGGAGCCGCTCCAGCCCGGCGGCATGCGCGT
GAATGTGGGCCTGCTCCCCGACCGCCTGCTGGCGGCGGAGGGGAACGGCC
TCGCGGGGGGGTCGTCGCGGTCTTCGGGGGGGCGTGACTTGGCGGCGGGC
CCCGCCATGGGCTCGTCGTGCAGGTTGCCGCTGTCGTGCTGACTCTGGAG
GGCGAGGTCGGGGAAATAATCCAGGGAGCGCCGGAGCGGGTGGGCTGGAT
GGCCGGGGCGGGGATCCGCGGGACGTTCTGCAAGGACGGCACCGATGGAA
AGATCAAGGGCTCGTGGTCCGCGCAGGCGGCCGCGACAGCCCTGGAGCCG
CTCCAGCCCGGCGGCATGCGCGTGAATGTGGGCCTGCTCCCCGACCGCCT
GCTGGCGGCGGAGGGGAACGGCCTCGCGGGGGGGTCGTCGCGGTCTTCGG
GGGGGCGTGACTTGGCGGCGGGCCCCGCCATGGGCTCGTCGTGCAGATCA
GTCTGGGTTACCGGCGGAGGGAACGACAGCGGGCTCAACGCGGGGGGGCG
CGGCTTCTCCGCGCTCAACTCGGGGCTCCAGCCGCCGTCAGGCCCGCTCA
TCGCCACGGTGGAGGTTCACCCGGAGCCGCCGTCGGACGCCTTGTTCCCC
GATCCCATCACCTGGGAGCCGCGGACGACAGCGGGAACGGTGGCGACGAT
CGCGGAGGAGGGATCTGTGGCGGCGGCGATCAGTCTGGGTTACCGGCGGA
GGGAACGACAGCGGGCTCAACGCGGGGGGGCGCGGCTTCTCCGCGCTCAA
CTCGGGGCTCCAGCCGCCGTCAGGCCCGCTCATCGCCACGGTGGAGGTTC
ACCCGGAGCCGCCGTCGGACGCCTTGTTCCCCGATCCCATCACCTGGGAG
CCGCGGACGACAGCGGGAACGGTGGCGACGATCGCGGAGGAGGGATCTGT
GGCGGCGGCG
back to top