mRNA_L-elsbetiae_contig10221.269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10221.269.1
Unique NamemRNA_L-elsbetiae_contig10221.269.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 6.130e-43
Identity = 74/92 (80.43%), Postives = 85/92 (92.39%), Query Frame = 1
Query:    1 LLCARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIAE 276
            LLCARRG+L+VG L+GPEERAD RHLA TL WPVYADVTSGLR W+A +GLGVGRL+QLLQDDAVK+++APDA+LQVGSPL SKRVQKFI+E
Sbjct: 1147 LLCARRGILIVGSLIGPEERADVRHLAVTLRWPVYADVTSGLRCWSAEMGLGVGRLDQLLQDDAVKEAIAPDAVLQVGSPLTSKRVQKFISE 1238          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.210e-23
Identity = 49/59 (83.05%), Postives = 57/59 (96.61%), Query Frame = 1
Query:  100 VYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIAE 276
            VYADVTSGLR W+A +GLGVGRL+QLLQDDAVK+++APDA+LQVGSPLISKRVQKFI+E
Sbjct:  908 VYADVTSGLRCWSAEMGLGVGRLDQLLQDDAVKEAIAPDAVLQVGSPLISKRVQKFISE 966          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.420e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   10 ARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFI 270
            A+RGLLV+G L    +RA  R LA  L WP++AD+ SGLR   A   L V   E LL D  +  +L PD ILQ+GSPL+SKR+ KF+
Sbjct:  773 AQRGLLVIGRLPQRRDRAHVRWLAQGLRWPIFADMGSGLRCDPALKHLLVAPYESLLADPLISSALDPDVILQIGSPLVSKRLPKFM 859          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A8J5XVK9_DIALT (MR_MLE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVK9_DIALT)

HSP 1 Score: 78.2 bits (191), Expect = 7.460e-15
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   10 ARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIAE 276
            ARRGLLV   L    +R     LAA L WP+YAD+TSGLR   A+  L +G L+Q L  + V   LAPD ++Q G+ +ISKR    + E
Sbjct:  848 ARRGLLVAASLPCAADREAVAQLAAWLQWPLYADLTSGLRLGCASASLVLGSLDQSLHSEIVARGLAPDVVVQFGTRIISKRAAALLGE 936          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A3C1KYI8_9DELT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3C1KYI8_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 3.170e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LLCARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKF 267
            L  A+RG+L++GGL   E RA A  LA TLGWPV+AD+TSGLR      G  +G L+  L       S  PD +L+VG  ++S+RVQ++
Sbjct:  236 LALAQRGMLLIGGLDDDEGRAKAHELAMTLGWPVWADITSGLR--GTLDGAHLGLLDAALSGSDGLWSETPDVVLRVGGTIVSERVQRW 322          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A2E7ZPT8_9DELT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7ZPT8_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 3.370e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LLCARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKF 267
            L  A+RG+L++GGL   E RA A  LA TLGWPV+AD+TSGLR      G  +G L+  L       S  PD +L+VG  ++S+RVQ++
Sbjct:  237 LALAQRGMLLIGGLDDDEGRAKAHELAMTLGWPVWADITSGLR--GTLDGAHLGLLDAALSGSDGLWSETPDVVLRVGGTIVSERVQRW 323          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: UPI0003B37C42 (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=1 Tax=Salisaeta longa TaxID=503170 RepID=UPI0003B37C42)

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 RGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIA 273
            RGL+V G L   ++RA A+ +AA LGWP+ ADVTSGLR   A   L +   +QLL  DA  +  AP+A+L +G   +SKR+++++A
Sbjct:  238 RGLVVAGRLDTADDRAAAQRMAAHLGWPLVADVTSGLRT-GAVEALRIAYADQLLAADAFANRHAPEAVLHLGGRAVSKRLRQYLA 322          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A830HGP7_9CHLO (MR_MLE domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HGP7_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 5.170e-12
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   16 RGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLL----QDDAVKDSLAPDAILQVGSPLISKRVQKFI 270
            RGL+V G  +G EE   A  LAA LGWP+ AD +SGLR   A     +  L+Q L    +D  + D++ PDA++Q+G+P  SKRVQ  +
Sbjct:  869 RGLVVAGACLGAEEAVGAAKLAAELGWPLVADASSGLRVGGAGAA-PLAALDQALLACEKDATLWDAVMPDAVVQIGAPPTSKRVQSML 956          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A1V5PXN4_9ACTN (Elongation factor 4 n=1 Tax=Actinobacteria bacterium ADurb.Bin346 TaxID=1852788 RepID=A0A1V5PXN4_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 4.390e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   19 GLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIAE 276
            G++ VG L+  E+R         LGWPVYAD+TSGLR       + +   +Q L D AV  + AP A++ +G P+ SKR  +F+++
Sbjct:  233 GIISVGRLLCDEDRHAVAEFCLKLGWPVYADITSGLRLGGIGTNI-IKHFDQQLLDTAVNKAAAPSAVIHIGGPVTSKRYCQFLSQ 317          
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Match: A0A847GBH8_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GBH8_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.070e-10
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 LLCARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVGLGV-GRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIA 273
            L   +RGLLV G L G  + A    LA TLGWPV AD+TSGLR    T G  V    +Q+L   A + +  PD +L +G    SKR+ + ++
Sbjct:  220 LAAVKRGLLVAGELRGAAQTAAVAELAKTLGWPVCADITSGLR--LGTDGAPVLAHYDQMLLSPAFRGAFTPDFVLHLGGAFTSKRLLEHLS 309          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10221.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF2_ECTSI6.130e-4380.43Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A6H5JV35_9PHAE1.210e-2383.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D2W1_9STRA2.420e-1650.57MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A8J5XVK9_DIALT7.460e-1546.07MR_MLE domain-containing protein n=1 Tax=Diacronem... [more]
A0A3C1KYI8_9DELT3.170e-1446.072-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A2E7ZPT8_9DELT3.370e-1446.072-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
UPI0003B37C421.600e-1345.352-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-... [more]
A0A830HGP7_9CHLO5.170e-1243.82MR_MLE domain-containing protein n=1 Tax=Pycnococc... [more]
A0A1V5PXN4_9ACTN4.390e-1138.37Elongation factor 4 n=1 Tax=Actinobacteria bacteri... [more]
A0A847GBH8_9BACT2.070e-1041.302-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10221contigL-elsbetiae_contig10221:2058..4471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10221.269.1prot_L-elsbetiae_contig10221.269.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10221 2058..4471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.8285744-CDS-L-elsbetiae_contig10221:2057..21051622815252.8285744-CDS-L-elsbetiae_contig10221:2057..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 2058..2105 -
1691682797.5034173-CDS-L-elsbetiae_contig10221:2057..21051691682797.5034173-CDS-L-elsbetiae_contig10221:2057..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 2058..2105 -
1622815252.8467093-CDS-L-elsbetiae_contig10221:3208..33371622815252.8467093-CDS-L-elsbetiae_contig10221:3208..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 3209..3337 -
1691682797.528439-CDS-L-elsbetiae_contig10221:3208..33371691682797.528439-CDS-L-elsbetiae_contig10221:3208..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 3209..3337 -
1622815252.856945-CDS-L-elsbetiae_contig10221:4372..44711622815252.856945-CDS-L-elsbetiae_contig10221:4372..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 4373..4471 -
1691682797.5367785-CDS-L-elsbetiae_contig10221:4372..44711691682797.5367785-CDS-L-elsbetiae_contig10221:4372..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 4373..4471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10221.269.1

>prot_L-elsbetiae_contig10221.269.1 ID=prot_L-elsbetiae_contig10221.269.1|Name=mRNA_L-elsbetiae_contig10221.269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
LLCARRGLLVVGGLVGPEERADARHLAATLGWPVYADVTSGLRRWAATVG
LGVGRLEQLLQDDAVKDSLAPDAILQVGSPLISKRVQKFIAE
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mRNA from alignment at L-elsbetiae_contig10221:2058..4471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10221.269.1 ID=mRNA_L-elsbetiae_contig10221.269.1|Name=mRNA_L-elsbetiae_contig10221.269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2414bp|location=Sequence derived from alignment at L-elsbetiae_contig10221:2058..4471- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGTGCGCACGGCGAGGCCTGCTGGTGGTGGGCGGCCTGGTCGGGCC CGAGGAACGGGCCGACGCTCGGCACCTTGCCGCGACGCTCGGCTGGCCGG TGAGAGAGTCTTGCCATGTCATGTCGTGTCGGGTCTTGTCTTATACTGTC CTGTCCTGTCCATCAGCCGGATGGCGATGGGGATGTGGTGATGTTTCGGC GGCTCTGGTGCTGTGGAGGTTGACGTGGCTGCTGTGTGTGTGTGTGTGTG TGTGTGTGTGTTTGTGTGCGTGTGTGTGTGTTTGTGTGCGTGTGTGTGTT GTGATCGCGTCTATTCTGGCGTCTGTCTGTCTTGTGTATTTGTCACCTTT GGGCATGGTTATGCTCTGTACACTGCTGTACACCCTCGGAGTGTTTGTGT TGCTACATACGTCTTTCGTGTACTGTACTATGTACGCATTTCGGTGTATG TTCTCTGTCCATATCTGCCAGCCGGGGTCACACGGGAGGGGATCACCACA GGGTTTTTTGTTGTTTTTTTTGCGGAGCGGTTTTGGTGGCGGTGACGGTC GACAGTGGATGAGACGGGAGTGGTGCTGTTGCTCGCGCTGGTGGTTGTTT TGTTGATGGTTGTTTGTGAGCGTCGAGATGGACGCCGTTTCATCTTACAT ACGCCTTCTCTGCTGCGCTGAAAGAATGGTCGGTAAGGTCGGGACGGTTT CCTTGTCAGGCGGGATGAGAGAAACAACCAACGACGACAGCAAACGGACG TTGTTTTTTTTCTGCTGCTTGTGGTGTAGACGCGGGCATCGGCGACACAG CAACAACAACTAACAGCAGCAACGTGGTTTTTTTGTTTCTGTTGCTTGTG GTGCAGACACAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCTCNNNNNNNGGACACAACAAAAACAAAAACCGCGACCAACGGG GTTTTTTTTTTTCTTTTGCGTGTGGGGCAGACCCCCCCCCCCCCCCCCCC CCCGCCGACGCCGGCATCGCCTAGCTACCGCCTGCGAAACCCCTCACTCA ACCCGCACGCACCCCTTGATGCCACACGCCGCAGGTTTACGCCGACGTGA CTTCGGGGTTGCGCCGCTGGGCTGCGACTGTCGGCTTGGGTGTCGGTCGT CTGGAGCAGCTGCTGCAGGATGATGCCGTCAAGGACTCCTTGGCGCCGGA CGCAATCTTGCAGGTGACAGACAATCAAAACGGAGCACGTTTTTTTCATG TGTGACCGATATTCAGGCATTGCACGCATCAAAAACACAAAAAAAGGAGA GGAGCCGCACAGAGTCCTCCGTGAAATTTCTTTTGAATTTACGATTTTAC GGATTCAAAAGAGGAGAAATCGCAAAAATTATTCAATTTTTCTTCGCGGA TTCAAAACAAAAGAAAAAAAAAACGTGAAATCCGACAAAAAACAACGACT CCGTCTAGGACGGCCGTCATACAAATTTTTCTCAGCGGAGCTAGCTCCCC GTGGCTAATGCCCTTGCAAACGGTGTTCTCCACGATGGAGTGTGCACGGA AAGCTGTCGAGGGCGGCGTGTTTCGTTCGCAGGGCCGCCAGTATCATGCT CCAAACCATCCATGTTTCCGACGCCGATGAGATGGAGCAAGCATCAAACA TCACAAACATGAAACATCGGTAGATGCCTCACCGCTGCTTCCGCGTTTTG GACCGAAGTCAGCGCCGAAATATCCCACGTCCACCCGGAGTGACTGAAGA AGAAAGCTGCCGGGATACCGGGGGTGTTGGGTGCGGGATGTGTGGTTGTG ATGTCCACCTACTTCTGCGTACTATAATTTAGGCGAGAATGGAAAGAGGG ATGCGAGCACTCAACATGTGAAGCTCACGGCATTTTTGTACCCCGATGGG ATCATGCAGTACCCGTTGGCTCGTGGCTTGCGTAACACGTGTTGCAACAC ATCATACTCCCACTATCCTGACCCTTTGAATCTTCTCGAACCATTCGGTC CTTGTTTGATCTTCTTCGCATTTGCTTCAAGCTTCTACCCGCATCCCAGC ATATCTAGCATCTACATTCTATGTACGGTAAGAGGTTACGTCACTGTAAT GGAATACCATTTGAATCCCATATCGAGTCCTTGCTCTAGTGTGGGTTAGG TTCCATCTTTGATTCATTGTTTATTTTTGAATAAGAGGTGCGACGAGAAA AAACACGCGTTCAACAGGCTCAACCCAAATGTTGCTGTGTTATGTGTGTC CCTCCCGTGTTTGCCCGCTGCCCCTAACACCCGCCTCCACCACCCCCGCC GGGCCTTCAATTCAAGGTGGGGTCTCCTCTGATCTCCAAGCGCGTTCAGA AGTTTATTGCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10221:2058..4471-

>mRNA_L-elsbetiae_contig10221.269.1 ID=mRNA_L-elsbetiae_contig10221.269.1|Name=mRNA_L-elsbetiae_contig10221.269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10221:2058..4471- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGTGCGCACGGCGAGGCCTGCTGGTGGTGGGCGGCCTGGTCGGGCC
CGAGGAACGGGCCGACGCTCGGCACCTTGCCGCGACGCTCGGCTGGCCGC
TGCTGTGCGCACGGCGAGGCCTGCTGGTGGTGGGCGGCCTGGTCGGGCCC
GAGGAACGGGCCGACGCTCGGCACCTTGCCGCGACGCTCGGCTGGCCGGT
TTACGCCGACGTGACTTCGGGGTTGCGCCGCTGGGCTGCGACTGTCGGCT
TGGGTGTCGGTCGTCTGGAGCAGCTGCTGCAGGATGATGCCGTCAAGGAC
TCCTTGGCGCCGGACGCAATCTTGCAGGTTTACGCCGACGTGACTTCGGG
GTTGCGCCGCTGGGCTGCGACTGTCGGCTTGGGTGTCGGTCGTCTGGAGC
AGCTGCTGCAGGATGATGCCGTCAAGGACTCCTTGGCGCCGGACGCAATC
TTGCAGGTGGGGTCTCCTCTGATCTCCAAGCGCGTTCAGAAGTTTATTGC
CGAGGTGGGGTCTCCTCTGATCTCCAAGCGCGTTCAGAAGTTTATTGCCG
AG
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