mRNA_L-elsbetiae_contig13482.2668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13482.2668.1
Unique NamemRNA_L-elsbetiae_contig13482.2668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13482.2668.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.420e-7
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = -1 
Query:    1 LRVPQGCKVTEIRDMKSLWGALEKCLYDGAN 93
            L   QGCKVTEIRDM SLW ALEKCLYDGAN
Sbjct:   16 LAFTQGCKVTEIRDMGSLWRALEKCLYDGAN 46
[Close]
BLAST of mRNA_L-elsbetiae_contig13482.2668.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.120e-7
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = -1 
Query:    1 LRVPQGCKVTEIRDMKSLWGALEKCLYDGAN 93
            L   QGCKVTEIRDM SLW ALEKCLYDGAN
Sbjct:  539 LAFTQGCKVTEIRDMGSLWRALEKCLYDGAN 569
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13482.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDN0_ECTSI1.420e-783.87Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KTC5_9PHAE6.120e-783.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13482contigL-elsbetiae_contig13482:3158..3502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.4126155-CDS-L-elsbetiae_contig13482:3157..34661622815518.4126155-CDS-L-elsbetiae_contig13482:3157..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13482 3158..3466 +
1691682937.2372024-CDS-L-elsbetiae_contig13482:3157..34661691682937.2372024-CDS-L-elsbetiae_contig13482:3157..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13482 3158..3466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.4244287-UTR-L-elsbetiae_contig13482:3466..35021622815518.4244287-UTR-L-elsbetiae_contig13482:3466..3502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13482 3467..3502 +
1691682937.2464354-UTR-L-elsbetiae_contig13482:3466..35021691682937.2464354-UTR-L-elsbetiae_contig13482:3466..3502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13482 3467..3502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13482.2668.1prot_L-elsbetiae_contig13482.2668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13482 3158..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13482.2668.1

>prot_L-elsbetiae_contig13482.2668.1 ID=prot_L-elsbetiae_contig13482.2668.1|Name=mRNA_L-elsbetiae_contig13482.2668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
VSPVVQALFQGPPQALHISDLRHFTTLRDAQYSTAHTKDFTGGSRRHPFS
RSQRGAQAPNVRSGLVLSKSEFLFSTTKKSHRRPPQHPRPANTGSHVVGC
NN*
back to top

mRNA from alignment at L-elsbetiae_contig13482:3158..3502+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13482.2668.1 ID=mRNA_L-elsbetiae_contig13482.2668.1|Name=mRNA_L-elsbetiae_contig13482.2668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig13482:3158..3502+ (Laminarionema elsbetiae ELsaHSoW15)
GTTAGCCCCGTCGTACAGGCACTTTTCCAGGGCCCCCCACAAGCTCTTCA
TATCTCTGATCTCCGTCACTTTACAACCCTGCGGGACGCGCAGTACAGCA
CAGCACACACTAAAGACTTCACGGGGGGCAGCCGACGACACCCGTTTAGC
CGTTCGCAGCGGGGGGCTCAAGCACCAAATGTAAGGTCCGGTCTAGTCCT
CTCAAAATCGGAGTTCCTCTTTTCTACGACCAAAAAAAGTCATCGCAGAC
CCCCGCAACACCCACGACCCGCGAACACGGGATCCCACGTGGTGGGGTGC
AATAATTGAAAAACCGGCGCTACGTTTGGCGCGAGAGGCGGGGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13482:3158..3502+

>mRNA_L-elsbetiae_contig13482.2668.1 ID=mRNA_L-elsbetiae_contig13482.2668.1|Name=mRNA_L-elsbetiae_contig13482.2668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig13482:3158..3502+ (Laminarionema elsbetiae ELsaHSoW15)
GTTAGCCCCGTCGTACAGGCACTTTTCCAGGGCCCCCCACAAGCTCTTCA
TATCTCTGATCTCCGTCACTTTACAACCCTGCGGGACGCGCAGTACAGCA
CAGCACACACTAAAGACTTCACGGGGGGCAGCCGACGACACCCGTTTAGC
CGTTCGCAGCGGGGGGCTCAAGCACCAAATGTAAGGTCCGGTCTAGTCCT
CTCAAAATCGGAGTTCCTCTTTTCTACGACCAAAAAAAGTCATCGCAGAC
CCCCGCAACACCCACGACCCGCGAACACGGGATCCCACGTGGTGGGGTGC
AATAATTGAGTTAGCCCCGTCGTACAGGCACTTTTCCAGGGCCCCCCACA
AGCTCTTCATATCTCTGATCTCCGTCACTTTACAACCCTGCGGGACGCGC
AGTACAGCACAGCACACACTAAAGACTTCACGGGGGGCAGCCGACGACAC
CCGTTTAGCCGTTCGCAGCGGGGGGCTCAAGCACCAAATGTAAGGTCCGG
TCTAGTCCTCTCAAAATCGGAGTTCCTCTTTTCTACGACCAAAAAAAGTC
ATCGCAGACCCCCGCAACACCCACGACCCGCGAACACGGGATCCCACGTG
GTGGGGTGCAATAATTGA
back to top