mRNA_L-elsbetiae_contig13443.2650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13443.2650.1
Unique NamemRNA_L-elsbetiae_contig13443.2650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13443.2650.1 vs. uniprot
Match: A0A6H5KQ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ23_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.180e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:  676 VAEPPSKSLVIGEGVLFEGSTEGCAAAVVGGKLVGTVKSRRLEITRAGKMEGTAYAETAEIAGTFEGNLTVTKALKVC 909
            VAEPPS SLVIGEGVLFEG+TEGCAAAVVGGKLVGTVKS+RLE+TRAGKMEGTA  E AEIAG FEGNLTVTKALK+C
Sbjct:  139 VAEPPSNSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMEGTAVVEMAEIAGAFEGNLTVTKALKIC 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13443.2650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ23_9PHAE1.180e-3388.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13443contigL-elsbetiae_contig13443:3943..4881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size939
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13443.2650.1prot_L-elsbetiae_contig13443.2650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13443 4190..4648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.8818152-UTR-L-elsbetiae_contig13443:3942..41891622815516.8818152-UTR-L-elsbetiae_contig13443:3942..4189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13443 3943..4189 +
1691682936.4210663-UTR-L-elsbetiae_contig13443:3942..41891691682936.4210663-UTR-L-elsbetiae_contig13443:3942..4189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13443 3943..4189 +
1622815516.9039688-UTR-L-elsbetiae_contig13443:4648..48811622815516.9039688-UTR-L-elsbetiae_contig13443:4648..4881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13443 4649..4881 +
1691682936.4449513-UTR-L-elsbetiae_contig13443:4648..48811691682936.4449513-UTR-L-elsbetiae_contig13443:4648..4881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13443 4649..4881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.8924797-CDS-L-elsbetiae_contig13443:4189..46481622815516.8924797-CDS-L-elsbetiae_contig13443:4189..4648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13443 4190..4648 +
1691682936.4345982-CDS-L-elsbetiae_contig13443:4189..46481691682936.4345982-CDS-L-elsbetiae_contig13443:4189..4648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13443 4190..4648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13443.2650.1

>prot_L-elsbetiae_contig13443.2650.1 ID=prot_L-elsbetiae_contig13443.2650.1|Name=mRNA_L-elsbetiae_contig13443.2650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MFKRRSSKGDVSAKIGYDHVNGKAPSRNGSISSVGGGLQSVAPVANIVAG
HQKQSSFSSASSYRKTTGMPSPEGDSGGAPDTISNSNGTSPLAALKPLPP
SAQQQQQQQQQQQQQQQQQRGRRPSRRQAPPRRPASPSRHPRRWPSLLPR
AW*
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mRNA from alignment at L-elsbetiae_contig13443:3943..4881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13443.2650.1 ID=mRNA_L-elsbetiae_contig13443.2650.1|Name=mRNA_L-elsbetiae_contig13443.2650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=939bp|location=Sequence derived from alignment at L-elsbetiae_contig13443:3943..4881+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGAGTAACCCTACCGCCTTGTGTACGATCTACGCCTTCTGTGGTGGG
AGAGAACATAAGGGAGAGAGAGAGAGAGACGAGAGACGAGACGAGAGGAG
CGCTCACGTTAGAGAAAACGGAGAGGCTGGAGAGAGTCCCCTGAAAGAGA
AGCGCCTTCCTTCCCCGCAAAGAGATCCCAAGGCCGCAGGCTACTTCTGG
AGTCCGGTGAGAGATCAGGCCCACACGCTTCACACATCGCACACACCATG
TTCAAGCGCAGGTCATCGAAGGGAGACGTCTCGGCGAAGATCGGGTATGA
TCACGTGAACGGCAAGGCGCCGTCGAGAAACGGCTCGATCTCTTCCGTCG
GCGGCGGGCTCCAGTCCGTGGCCCCGGTTGCCAACATCGTCGCGGGCCAC
CAGAAGCAGTCGTCCTTCTCGTCGGCCTCCTCCTACCGGAAAACGACAGG
CATGCCCTCTCCGGAGGGAGACTCGGGCGGCGCTCCGGATACCATCTCCA
ACTCCAACGGGACCTCTCCTCTGGCGGCGCTCAAGCCGCTCCCGCCCAGC
GCGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGGGCCGGCGACCATCACGGCGTCAAGCTCCACCAAGGCGTCCAG
CAAGTCCAAGTCGGCACCCAAGGCGGTGGCCGAGCCTCCTTCCAAGAGCC
TGGTGATCGGAGAGGGGGTGCTTTTCGAGGGCTCCACGGAGGGGTGCGCG
GCGGCCGTGGTTGGCGGGAAGCTCGTCGGGACGGTCAAGTCGAGGCGGCT
CGAGATCACGCGGGCGGGGAAGATGGAGGGGACGGCCTACGCGGAGACCG
CCGAGATCGCCGGCACGTTCGAGGGGAACCTCACGGTCACCAAGGCTCTC
AAGGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13443:3943..4881+

>mRNA_L-elsbetiae_contig13443.2650.1 ID=mRNA_L-elsbetiae_contig13443.2650.1|Name=mRNA_L-elsbetiae_contig13443.2650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13443:3943..4881+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAAGCGCAGGTCATCGAAGGGAGACGTCTCGGCGAAGATCGGGTA
TGATCACGTGAACGGCAAGGCGCCGTCGAGAAACGGCTCGATCTCTTCCG
TCGGCGGCGGGCTCCAGTCCGTGGCCCCGGTTGCCAACATCGTCGCGGGC
CACCAGAAGCAGTCGTCCTTCTCGTCGGCCTCCTCCTACCGGAAAACGAC
AGGCATGCCCTCTCCGGAGGGAGACTCGGGCGGCGCTCCGGATACCATCT
CCAACTCCAACGGGACCTCTCCTCTGGCGGCGCTCAAGCCGCTCCCGCCC
AGCGCGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGGGGCCGGCGACCATCACGGCGTCAAGCTCCACCAAGGCGTC
CAGCAAGTCCAAGTCGGCACCCAAGGCGGTGGCCGAGCCTCCTTCCAAGA
GCCTGGTGAATGTTCAAGCGCAGGTCATCGAAGGGAGACGTCTCGGCGAA
GATCGGGTATGATCACGTGAACGGCAAGGCGCCGTCGAGAAACGGCTCGA
TCTCTTCCGTCGGCGGCGGGCTCCAGTCCGTGGCCCCGGTTGCCAACATC
GTCGCGGGCCACCAGAAGCAGTCGTCCTTCTCGTCGGCCTCCTCCTACCG
GAAAACGACAGGCATGCCCTCTCCGGAGGGAGACTCGGGCGGCGCTCCGG
ATACCATCTCCAACTCCAACGGGACCTCTCCTCTGGCGGCGCTCAAGCCG
CTCCCGCCCAGCGCGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGGGGCCGGCGACCATCACGGCGTCAAGCTCCAC
CAAGGCGTCCAGCAAGTCCAAGTCGGCACCCAAGGCGGTGGCCGAGCCTC
CTTCCAAGAGCCTGGTGA
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