mRNA_L-elsbetiae_contig1338.2607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1338.2607.1
Unique NamemRNA_L-elsbetiae_contig1338.2607.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5K0Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.910e-39
Identity = 84/220 (38.18%), Postives = 123/220 (55.91%), Query Frame = 2
Query:  248 EVWQKVVKDVVAQKVLVFRKEDAEKITGLRVSPVGVVEEREKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901
            +VW+K+  DV   + +V RK +A  + G+RV+P+G V  + K+ +I+D SF        +  +NK T +  +P C     +   L  L  LR  +P+ RI+  K DV S+FR + ++   A  F YV+G+ LV DLRL FGW   PG +G +ASA E++HRNT+  +A L P GI   ++VKI P   +G   P+P    V    GGGP D    R +VD
Sbjct:   90 QVWEKLCDDVKRYRCIVLRKANASDVRGIRVAPLGAVPGK-KVRIINDFSFDPSTSKGSKGGLNKDTIMSGVPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHYFCYVIGDVLVADLRLTFGWAASPGLWGELASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRPHRGGGPADDFLARVYVD 308          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.240e-36
Identity = 88/226 (38.94%), Postives = 118/226 (52.21%), Query Frame = 2
Query:  251 VWQKVVKDVVAQKVLVFRKEDAEKITGLRVSPVGVVEEREKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVDGAISMEA 922
            +W+K+  DV  ++ LV  K  A +I  LRVSPVGVV    K  VI+D+SF   +    +  +N  T  D IP C  A  +   L  L+ LR   P+  +++   DV  +FR + +    A  FGY LG+ LVVDLRL FGW G PG FG+ ASA E+AHRNT   +A + P G+    +VKI     EG   PVP   V+    GG    P     +VD    + A
Sbjct:   84 LWEKLGNDVRRERCLVLEKTSAHEIPNLRVSPVGVVVTH-KPRVINDLSFNPTDRTT-KGGLNADTNADTIPPCLCAGALPGFLTALVSLRAKCPKLHLLMATTDVNDAFRNVRINPDQAHNFGYTLGDLLVVDLRLPFGWTGSPGHFGVTASAAEHAHRNTNLSTAQILPEGVDMMKHVKIVDRWEEGEPTPVPSDVVIRPSTGGELNSPFETWVYVDDHALLRA 307          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.980e-24
Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  371 KLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMK-ELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901
            K+ +++D SF    +A+       ST +    E  +A V K   L  L  LR  +P+ RI+    DV S+FR + ++   A  F YV+G+ LV DLRL FGW   PG +G++ASA E++HRNT+  +A L P GI   ++VKI P   +G   P+P    V    GGGP D    R +VD
Sbjct:   86 KVRIMNDFSFT---QALPRGQKVGSTKIPLCTEFHVACVAKPHQLEELASLRVRWPDKRILAATADVTSAFRNVRISPDHAHNFCYVIGDVLVADLRLTFGWAASPGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRPHRGGGPADDFLARVYVD 262          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5L1P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.300e-22
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901
            +P C     +   L  L  LR  +P+ RI+  K DV S+FR + ++   A  F YV+G+ LV DL L FGW    G +G++ASA E++HRNT+  +A L P GI   ++VKI P   +G   P+P    V    GG P      R +VD
Sbjct:    4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHKFCYVIGDVLVADLWLTFGWAASRGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSVGVRPHRGGVPAADFLARVYVD 152          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5K4E7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.030e-22
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPAEGRIVPVP 829
            +P C     +   L  L  LR  +P+ RI+  K DV S+FR + ++   A  F YV+G+ LV DLRL FGW   PG +G++ASA E++HRNT+  +A L P GI   ++VK  P   +  P P
Sbjct:    4 VPRCLCGEALPAFLEALTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHKFRYVVGDVLVADLRLTFGWAASPGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKKKPPWEKGTPTP 126          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.030e-21
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  260 KVVKDVVAQKVLVFRKEDAEKI--TGLRVSPVGVVEE-REKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAI 715
            KV++D+   + +V     A     T L ++PV VV+E   K  V+HD+S     E     SVN +T  +E P      + + +L R+  LRQ +P  RI+I KMDVKS+FRQ+ +   G    GY   + +VVDLRLQFGWR  PGW+ +   AI
Sbjct:   64 KVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGE-----SVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 212          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5KRB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.200e-21
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901
            +P C     +   L  L  LR  +P+ RI+  K DV S+FR + ++   A  F  V+G+ L+ DL L FG    PG +G++ASA E++HRNT+  +A L   GI   ++VKI P   +G   P+P    V    GGGP D    R + D
Sbjct:    4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHNFCNVIGDVLIADLPLTFGGAASPGLWGVLASAAEHSHRNTSLATARLLSEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRLHRGGGPADDFLARVYTD 152          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.070e-19
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  326 TGLRVSPVGVVEE-REKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPG 688
            T L ++PV VV+E      V+HD+S     E     SVN +T  +E P  E   + + +L R+  LRQ +P  RI+I KMDVKS+FRQ+ +   G    GY   + +VVDLRLQFGWR  PG
Sbjct:    5 TRLHINPVFVVDEGAANFRVVHDLSALLHGE-----SVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPG 120          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5L6K2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.940e-13
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVAS 709
            +P C     +   L  L  LR  +P+ RI+  K DV S+FR + ++   A  F YV+G+ LV DLRL FGW   PG +G++AS
Sbjct:    4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHNFCYVIGDVLVADLRLTFGWAASPGLWGVLAS 86          
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-7
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 2
Query:  560 MDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHR 730
            MDVKS+FRQ+ +   G    GY   + +VVDLRLQFGWR  PGW+ +   AIE+ +R
Sbjct:  110 MDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAIEWWYR 165          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K0Y6_9PHAE3.910e-3938.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG94_9PHAE1.240e-3638.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZM1_9PHAE1.980e-2438.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1P2_9PHAE3.300e-2238.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E7_9PHAE5.030e-2240.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZC0_9STRA1.030e-2139.35Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KRB5_9PHAE6.200e-2136.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKZ7_9STRA1.070e-1943.44Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6H5L6K2_9PHAE4.940e-1340.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A835YMP6_9STRA1.150e-750.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1338contigL-elsbetiae_contig1338:20233..21154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog67593.Physo133219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein). Source PGD
EggNOG OGs2EEVD@1,2SK6B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size922
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.686633-UTR-L-elsbetiae_contig1338:20232..207071622815510.686633-UTR-L-elsbetiae_contig1338:20232..20707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1338 20233..20707 +
1691682934.042065-UTR-L-elsbetiae_contig1338:20232..207071691682934.042065-UTR-L-elsbetiae_contig1338:20232..20707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1338 20233..20707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.697311-CDS-L-elsbetiae_contig1338:20707..211541622815510.697311-CDS-L-elsbetiae_contig1338:20707..21154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1338 20708..21154 +
1691682934.057458-CDS-L-elsbetiae_contig1338:20707..211541691682934.057458-CDS-L-elsbetiae_contig1338:20707..21154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1338 20708..21154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1338.2607.1prot_L-elsbetiae_contig1338.2607.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1338 20708..21154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1338.2607.1

>prot_L-elsbetiae_contig1338.2607.1 ID=prot_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGY
VLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIR
TTANVKIAPAEGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVDGAISMEA
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mRNA from alignment at L-elsbetiae_contig1338:20233..21154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1338.2607.1 ID=mRNA_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=922bp|location=Sequence derived from alignment at L-elsbetiae_contig1338:20233..21154+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGAGTGATGTCAACGGTCAACGGTAGACGGCGGATGTATAGGTTTCAT ACCCAAGCTTTTGGGTGGTAGGCTTACCGCACCGCACATGGACCCGAAGA ATATCGAGCGGCGCTTCGCGGGGTTTCAAGGCCTTGAGAAAGTAGTGCAG ATAGCGGTAGGGGGAGTTCCGATTGCAGTAGGTCCGGGAGGGAACTTGGG GAACGAGCTGGAGTACGGAAACCACCGGAGCGTAGAAGTGGCGTAAAGAG GTGTGGCAGAAGGTAGTCAAAGATGTGGTGGCCCAGAAAGTGTTGGTGTT CCGGAAGGAGGACGCAGAAAAAATCACGGGGCTGCGGGTTTCTCCGGTGG GGGTAGTGGAGGAGAGAGAGAAACTGCTAGTGATACACGATGTGTCATTT GCGGCGGGAGAAGAGGCGGTAGGGGAGAACTCCGTGAACAAGTCCACGTA CCTTGACGAAATTCCGGAGTGTGAAATGGCGTCAGTAATGAAGGAGTTGT TGGTGCGTTTGCTGGGCCTGCGGCAAACGTTTCCGGAGGCCAGGATTGTG ATACAAAAAATGGACGTGAAGAGTTCGTTCAGACAGATACCCGTAGCCAC AGGAGGAGCGACAGCCTTTGGGTACGTCCTTGGGGAGTTCTTGGTGGTTG ACCTGCGCCTGCAGTTTGGGTGGAGGGGCCGCCCCGGTTGGTTTGGGATA GTCGCGTCGGCTATCGAGTATGCCCATAGAAACACAACGAGAGAATCGGC GGTGTTGACACCATCGGGGATACGTACGACCGCCAACGTAAAAATAGCAC CGGCAGAAGGAAGAATTGTGCCGGTACCGCGGCAGTGCGTTGTTTCTGAT GTGGAAGGGGGAGGACCGGGAGACCCGGCGTTTGTGAGGTGTTTCGTCGA CGGCGCGATTAGTATGGAAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1338:20233..21154+

>mRNA_L-elsbetiae_contig1338.2607.1 ID=mRNA_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1338:20233..21154+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCAGTAATGAAGGAGTTGTTGGTGCGTTTGCTGGGCCTGCGGCA
AACGTTTCCGGAGGCCAGGATTGTGATACAAAAAATGGACGTGAAGAGTT
CGTTCAGACAGATACCCGTAGCCACAGGAGGAGCGACAGCCTTTGGGTAC
GTCCTTGGGGAGTTCTTGGTGGTTGACCTGCGCCTGCAGTTTGGGTGGAG
GGGCCGCCCCGGTTGGTTTGGGATAGTCGCGTCGGCTATCGAGTATGCCC
ATAGAAACACAACGAGAGAATCGGCGGTGTTGACACCATCGGGGATACGT
ACGACCGCCAACGTAAAAATAGCACCGGCAGAAGGAAGAATTGTGCCGGT
ACCGCGGCAGTGCGTTGTTTCTGATGTGGAAGGGGGAGGACCGGGAGACC
CGGCGTTTGTGAGGTGTTTCGTCGACGGCGCGATTAGTATGGAAGCGATG
GCGTCAGTAATGAAGGAGTTGTTGGTGCGTTTGCTGGGCCTGCGGCAAAC
GTTTCCGGAGGCCAGGATTGTGATACAAAAAATGGACGTGAAGAGTTCGT
TCAGACAGATACCCGTAGCCACAGGAGGAGCGACAGCCTTTGGGTACGTC
CTTGGGGAGTTCTTGGTGGTTGACCTGCGCCTGCAGTTTGGGTGGAGGGG
CCGCCCCGGTTGGTTTGGGATAGTCGCGTCGGCTATCGAGTATGCCCATA
GAAACACAACGAGAGAATCGGCGGTGTTGACACCATCGGGGATACGTACG
ACCGCCAACGTAAAAATAGCACCGGCAGAAGGAAGAATTGTGCCGGTACC
GCGGCAGTGCGTTGTTTCTGATGTGGAAGGGGGAGGACCGGGAGACCCGG
CGTTTGTGAGGTGTTTCGTCGACGGCGCGATTAGTATGGAAGCG
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