mRNA_L-elsbetiae_contig1338.2607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5K0Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.910e-39 Identity = 84/220 (38.18%), Postives = 123/220 (55.91%), Query Frame = 2 Query: 248 EVWQKVVKDVVAQKVLVFRKEDAEKITGLRVSPVGVVEEREKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901 +VW+K+ DV + +V RK +A + G+RV+P+G V + K+ +I+D SF + +NK T + +P C + L L LR +P+ RI+ K DV S+FR + ++ A F YV+G+ LV DLRL FGW PG +G +ASA E++HRNT+ +A L P GI ++VKI P +G P+P V GGGP D R +VD Sbjct: 90 QVWEKLCDDVKRYRCIVLRKANASDVRGIRVAPLGAVPGK-KVRIINDFSFDPSTSKGSKGGLNKDTIMSGVPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHYFCYVIGDVLVADLRLTFGWAASPGLWGELASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRPHRGGGPADDFLARVYVD 308
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.240e-36 Identity = 88/226 (38.94%), Postives = 118/226 (52.21%), Query Frame = 2 Query: 251 VWQKVVKDVVAQKVLVFRKEDAEKITGLRVSPVGVVEEREKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVDGAISMEA 922 +W+K+ DV ++ LV K A +I LRVSPVGVV K VI+D+SF + + +N T D IP C A + L L+ LR P+ +++ DV +FR + + A FGY LG+ LVVDLRL FGW G PG FG+ ASA E+AHRNT +A + P G+ +VKI EG PVP V+ GG P +VD + A Sbjct: 84 LWEKLGNDVRRERCLVLEKTSAHEIPNLRVSPVGVVVTH-KPRVINDLSFNPTDRTT-KGGLNADTNADTIPPCLCAGALPGFLTALVSLRAKCPKLHLLMATTDVNDAFRNVRINPDQAHNFGYTLGDLLVVDLRLPFGWTGSPGHFGVTASAAEHAHRNTNLSTAQILPEGVDMMKHVKIVDRWEEGEPTPVPSDVVIRPSTGGELNSPFETWVYVDDHALLRA 307
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.980e-24 Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 2 Query: 371 KLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMK-ELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901 K+ +++D SF +A+ ST + E +A V K L L LR +P+ RI+ DV S+FR + ++ A F YV+G+ LV DLRL FGW PG +G++ASA E++HRNT+ +A L P GI ++VKI P +G P+P V GGGP D R +VD Sbjct: 86 KVRIMNDFSFT---QALPRGQKVGSTKIPLCTEFHVACVAKPHQLEELASLRVRWPDKRILAATADVTSAFRNVRISPDHAHNFCYVIGDVLVADLRLTFGWAASPGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRPHRGGGPADDFLARVYVD 262
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5L1P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P2_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.300e-22 Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 2 Query: 461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901 +P C + L L LR +P+ RI+ K DV S+FR + ++ A F YV+G+ LV DL L FGW G +G++ASA E++HRNT+ +A L P GI ++VKI P +G P+P V GG P R +VD Sbjct: 4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHKFCYVIGDVLVADLWLTFGWAASRGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKIKPPWEKGTPTPIPSSVGVRPHRGGVPAADFLARVYVD 152
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5K4E7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E7_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.030e-22 Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 2 Query: 461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPAEGRIVPVP 829 +P C + L L LR +P+ RI+ K DV S+FR + ++ A F YV+G+ LV DLRL FGW PG +G++ASA E++HRNT+ +A L P GI ++VK P + P P Sbjct: 4 VPRCLCGEALPAFLEALTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHKFRYVVGDVLVADLRLTFGWAASPGLWGVLASAAEHSHRNTSLANARLLPEGIAMMSHVKKKPPWEKGTPTP 126
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.030e-21 Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = 2 Query: 260 KVVKDVVAQKVLVFRKEDAEKI--TGLRVSPVGVVEE-REKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAI 715 KV++D+ + +V A T L ++PV VV+E K V+HD+S E SVN +T +E P + + +L R+ LRQ +P RI+I KMDVKS+FRQ+ + G GY + +VVDLRLQFGWR PGW+ + AI Sbjct: 64 KVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGE-----SVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 212
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5KRB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.200e-21 Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 2 Query: 461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHRNTTRESAVLTPSGIRTTANVKIAPA--EGRIVPVPRQCVVSDVEGGGPGDPAFVRCFVD 901 +P C + L L LR +P+ RI+ K DV S+FR + ++ A F V+G+ L+ DL L FG PG +G++ASA E++HRNT+ +A L GI ++VKI P +G P+P V GGGP D R + D Sbjct: 4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHNFCNVIGDVLIADLPLTFGGAASPGLWGVLASAAEHSHRNTSLATARLLSEGIAMMSHVKIKPPWEKGTPTPIPSSAGVRLHRGGGPADDFLARVYTD 152
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.070e-19 Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 2 Query: 326 TGLRVSPVGVVEE-REKLLVIHDVSFAAGEEAVGENSVNKSTYLDEIPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPG 688 T L ++PV VV+E V+HD+S E SVN +T +E P E + + +L R+ LRQ +P RI+I KMDVKS+FRQ+ + G GY + +VVDLRLQFGWR PG Sbjct: 5 TRLHINPVFVVDEGAANFRVVHDLSALLHGE-----SVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPG 120
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A6H5L6K2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K2_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.940e-13 Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 2 Query: 461 IPECEMASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVAS 709 +P C + L L LR +P+ RI+ K DV S+FR + ++ A F YV+G+ LV DLRL FGW PG +G++AS Sbjct: 4 VPRCLCGEALPAFLEELTSLRVRWPDKRILAAKADVTSAFRNVRISPDHAHNFCYVIGDVLVADLRLTFGWAASPGLWGVLAS 86
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.150e-7 Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 2 Query: 560 MDVKSSFRQIPVATGGATAFGYVLGEFLVVDLRLQFGWRGRPGWFGIVASAIEYAHR 730 MDVKS+FRQ+ + G GY + +VVDLRLQFGWR PGW+ + AIE+ +R Sbjct: 110 MDVKSAFRQLALDVRGPL-LGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAIEWWYR 165 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1338.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1338.2607.1 >prot_L-elsbetiae_contig1338.2607.1 ID=prot_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp MASVMKELLVRLLGLRQTFPEARIVIQKMDVKSSFRQIPVATGGATAFGYback to top mRNA from alignment at L-elsbetiae_contig1338:20233..21154+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1338.2607.1 ID=mRNA_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=922bp|location=Sequence derived from alignment at L-elsbetiae_contig1338:20233..21154+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1338:20233..21154+ >mRNA_L-elsbetiae_contig1338.2607.1 ID=mRNA_L-elsbetiae_contig1338.2607.1|Name=mRNA_L-elsbetiae_contig1338.2607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1338:20233..21154+ (Laminarionema elsbetiae ELsaHSoW15)back to top |