mRNA_L-elsbetiae_contig13308.2562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13308.2562.1
Unique NamemRNA_L-elsbetiae_contig13308.2562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13308.2562.1 vs. uniprot
Match: A0A6H5JVW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.300e-13
Identity = 49/102 (48.04%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   10 GDRGVLLRGQEACLDNGDGVGAHGWLLASSXXXXXXXXXXXXVPLDXXXXXXXXXXXXXXXLRGGAGTADAGAVVLLLACYQNLIGVLHTGLEASRWRPRPR 315
            GDRGVLL+G E      +   A  WL   S             P                 +R G   ADAGAVVLLLACYQNLIGVLH+GLEASRWRPRPR
Sbjct:  337 GDRGVLLKGLETSAMGEET--ARRWLPPPSAADGRQAEEK---PNAIIPVGGEGSQERGGGVRNGGNAADAGAVVLLLACYQNLIGVLHSGLEASRWRPRPR 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13308.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVW6_9PHAE2.300e-1348.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13308contigL-elsbetiae_contig13308:335..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size517
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13308.2562.1prot_L-elsbetiae_contig13308.2562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13308 335..2551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.3436344-CDS-L-elsbetiae_contig13308:334..4241622815506.3436344-CDS-L-elsbetiae_contig13308:334..424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13308 335..424 +
1691682931.6282399-CDS-L-elsbetiae_contig13308:334..4241691682931.6282399-CDS-L-elsbetiae_contig13308:334..424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13308 335..424 +
1622815506.3557463-CDS-L-elsbetiae_contig13308:2323..25511622815506.3557463-CDS-L-elsbetiae_contig13308:2323..2551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13308 2324..2551 +
1691682931.6379704-CDS-L-elsbetiae_contig13308:2323..25511691682931.6379704-CDS-L-elsbetiae_contig13308:2323..2551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13308 2324..2551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.365154-UTR-L-elsbetiae_contig13308:2551..27501622815506.365154-UTR-L-elsbetiae_contig13308:2551..2750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13308 2552..2750 +
1691682931.6468244-UTR-L-elsbetiae_contig13308:2551..27501691682931.6468244-UTR-L-elsbetiae_contig13308:2551..2750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13308 2552..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13308.2562.1

>prot_L-elsbetiae_contig13308.2562.1 ID=prot_L-elsbetiae_contig13308.2562.1|Name=mRNA_L-elsbetiae_contig13308.2562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MGEGDRGVLLRGQEACLDNGDGVGAHGWLLASSAAKEEEERLSALVPLDG
DDNGSGGGSRGGGVLRGGAGTADAGAVVLLLACYQNLIGVLHTGLEASRW
RPRPR*
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mRNA from alignment at L-elsbetiae_contig13308:335..2750+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13308.2562.1 ID=mRNA_L-elsbetiae_contig13308.2562.1|Name=mRNA_L-elsbetiae_contig13308.2562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2416bp|location=Sequence derived from alignment at L-elsbetiae_contig13308:335..2750+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAGGGGGACCGCGGAGTGCTGCTGCGGGGGCAGGAGGCGTGCTT
GGACAACGGGGACGGTGTTGGTGCGCATGGCTGGCTGCTGGTGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACGGCTTCGG
TTGTTGTTTTTGTTGTTATTGTTGTTGTTGTTTCTCACATTAGCTCTCTA
GTCCAAAACATCCTTGGGGGCCCGTGGTCACAAAACAACGCATACTCGAC
GCCGCGGAAGAGAAATAAAACAAAATATGGTACATACGCGCCGGTGGTAC
TAAACTGGACCCCGGGGGGTCTTGCGTCTCGCCAGCACAGAATCAAAGTT
ATAGTACATACTACTCGGAGGAGAAAATAAAAGAAAGTTCGAAAAGCAAA
CCAAATAAATGCCAAATACCACGCCAGGGGAGGAAAGAGAACTACAGACA
GCCGAAGGCTTCCCACACCAGAAGGAGGCAGGAAAAAGGCCGGGAGGCGG
AGGTCTGCGAGCCAAAAAACCAAGATAGCAAAATAGCAGGGGACCAAAGC
TTCGGTATAAACGTTGTTTGTCTTTCTTGTGGCGGTTTTTGCGCGTGTAA
ACATACATACATACACATGTGGTACCTTCTTTAGCTTATTTTTCATCATG
GGGGCCCCGTATTTTCCATCATGGGTGCCCCGTGGTCATGTCGGCCGACA
ACAATCCACATTTACGGGCTCAAAAATCGAGAAAATTACGAATCCCGGCC
GTCCATCGTCCTCGGTGCTTGCTTGCCCACGAGCGTCACTCTACTGGATA
CTTGCCAACCTCCCGGCCTGCGTCTCTTCCCGCAGCGAGCGAGCGTCGCA
GCAGCACGTCGTTTTTTTTTATTTTTTATTTTGAGTAAATATATGTTTGT
GGTTTTGTTTTTCAGTATATTCAATTCAGGATGCCCTCGTGGCAAGGAGC
CCATCGAGCACTGGAAATAAAAAATAAACGTGAAGGAAGGAAGGATAAAA
AAAAAGAAAAAATAAATCACCCTTTTTGGGGCGAGTTAGTAGCTCTGTGT
CCCACGGGAATCGGCCGCGCCAAGTGTTTTGGATTAGTACGGGCAGATGG
AGGGCGGTACTGGGTAGAGAGGTCGGGACGGTTTTTGATGTGAAGACCAA
CAATCAACAACAGCAGTTCATGTACGTATGTACTTTCCCACTGCATACAT
AAATGGCCGCTAAAGACGCAAAGCGGGAGCGCACGCCCCAGAGGGGATCA
TCATCACATCGGGTCGGCAAAGAGTGTTGAACGAACATCCGAAAAATCTT
GTGCGTTTTTTCATTTCAAGATGCAATCTACGTAAATACGCCGCTTTATT
TTTGGACGGCAACGGAGGCGTGCCCGCCGAGAAACAGGCCGACAGCGCGT
CGGATCCGCCAACCCATAGCGCCCAGCTAAGAAATGCACACTTTGCGGAG
CCCCCTGTGCACCGGCAGCCCGACTGGGGGCTGTGAACAAGTCCAGCGAG
ACTCGTATCCCAACCTACCCACCCCTCTGTAAGCGCACAGGGCCACAGCA
TAATCGGCAGGGCAGCTAGCTCCCGCCGACCAGGGGCTCCGCGTCCTCGC
GGGCCCTCAACCCTAAACACGGCAGGTTTAGGTTTCCAATGACAAACTTG
GCCTCGCGTGCCCACCGTCACTGCATTTGCATTTGCCTCTGTCTCTCGTT
TGTGCGTCTCTCTCTATTTCCCTGTCTCTCTGTCTCTCTCTATTTCTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGCC
TGCCTGCCTGTCTGTCCCTTTCTCTCTCTCTCTCTCTTCCCCCCCCCCGT
TTCTCTCTGCGTCTCTCCCTGCTTGTCTCTCTCTCGTTCTATCTGTATTT
CCCTCTATTTCTCCCTCTATAAATATCTTTCTCTGTTTTTGCTTTTTCTA
TCTGTATATCTCTCTTCCTGTCTCTCCAACACCGACCAGGCTTCGTCCGC
AGCAAAAGAAGAAGAAGAGCGACTCAGCGCCCTTGTGCCCCTCGACGGCG
ACGACAACGGTAGCGGCGGTGGCAGCCGCGGTGGCGGCGTCTTGAGGGGC
GGGGCGGGGACGGCCGACGCCGGCGCCGTGGTTCTGCTCCTTGCGTGCTA
CCAGAACCTGATCGGGGTGCTGCACACGGGGCTGGAGGCGTCGCGTTGGC
GGCCCCGGCCCCGGTGACCAAAGATGCGGGACGACCGCAGTTGGAGCTCG
TGACTGTCCGCTGGTCGCGGGATTTCCACACTAATTTCAGCATAAAAGTG
GCGGGGAGCCCCGTGACGGCCGTTTTTGTGGCCGTCATTCCACATCTCTG
CCGGCAGTCACCAGGCCGGGGACGAAGCAGCGCGTCGGAATCACACCAGC
CTTTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13308:335..2750+

>mRNA_L-elsbetiae_contig13308.2562.1 ID=mRNA_L-elsbetiae_contig13308.2562.1|Name=mRNA_L-elsbetiae_contig13308.2562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig13308:335..2750+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAGGGGGACCGCGGAGTGCTGCTGCGGGGGCAGGAGGCGTGCTT
GGACAACGGGGACGGTGTTGGTGCGCATGGCTGGCTGCTGATGGGGGAGG
GGGACCGCGGAGTGCTGCTGCGGGGGCAGGAGGCGTGCTTGGACAACGGG
GACGGTGTTGGTGCGCATGGCTGGCTGCTGGCTTCGTCCGCAGCAAAAGA
AGAAGAAGAGCGACTCAGCGCCCTTGTGCCCCTCGACGGCGACGACAACG
GTAGCGGCGGTGGCAGCCGCGGTGGCGGCGTCTTGAGGGGCGGGGCGGGG
ACGGCCGACGCCGGCGCCGTGGTTCTGCTCCTTGCGTGCTACCAGAACCT
GATCGGGGTGCTGCACACGGGGCTGGAGGCGTCGCGTTGGCGGCCCCGGC
CCCGGTGAGCTTCGTCCGCAGCAAAAGAAGAAGAAGAGCGACTCAGCGCC
CTTGTGCCCCTCGACGGCGACGACAACGGTAGCGGCGGTGGCAGCCGCGG
TGGCGGCGTCTTGAGGGGCGGGGCGGGGACGGCCGACGCCGGCGCCGTGG
TTCTGCTCCTTGCGTGCTACCAGAACCTGATCGGGGTGCTGCACACGGGG
CTGGAGGCGTCGCGTTGGCGGCCCCGGCCCCGGTGA
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