mRNA_L-elsbetiae_contig13251.2528.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13251.2528.1
Unique NamemRNA_L-elsbetiae_contig13251.2528.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.390e-16
Identity = 68/177 (38.42%), Postives = 88/177 (49.72%), Query Frame = 2
Query:   14 IMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG*TR--QRSS*IRWKPSAGCFCV*RQRMPFLGCGPAAMSPLSPRLQGLQPRPP 538
            ++LT+AGVVDTG AL+ AA     V+V+ LLQ+ ++ A   +   YVN     G T +  SI            P  +++ RLLVDAGADTTS V   D+ G      TP       +  KK EG       SS   W+PSA C C  +Q +  LGCG A + P    LQ  Q  PP
Sbjct:  164 LLLTDAGVVDTGGALITAAHYGGVVSVEHLLQRQKQTA--AERKAYVNAPGLFGATPLLWSIQ--------ACRPCSSRIARLLVDAGADTTSTVTMADVQGFGLMAYTPKEIAIRRIRRKKVEGKEDIVATSSCAAWRPSAACCCKWKQFVRSLGCGLATIPPSLTLLQRAQAEPP 330          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.740e-10
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 2
Query:   17 MLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG 388
            +LT+AGVVDTG AL  +A    E +VK LLQ   +   P     YVN RD +G T +  SI     + GV    S  +V RLLV+AGADTT+ +R  +  G+     TPL  T  +L +KK +G
Sbjct:  221 LLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPG---AYVNVRDRNGTTPLLSSI----YVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDG 337          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D7FYA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.780e-10
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 2
Query:    8 ITIMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKK 379
            I +ML +AGV+DTG  L+ A    SE +VK LLQQ   +    D   YVN +   G T V  SI      G   L  SP +V+RL +DAGADT S VR  +  G+    GTPLA+T  LL +++
Sbjct:  367 IVVMLADAGVIDTGRVLIDATKFGSEASVKILLQQQRWKHM--DWNTYVNKKHPDGRTPVVCSI------GRALLSGSP-RVLRLFLDAGADTASTVRIANKEGVEVFSGTPLAYTTWLLRDQQ 481          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-9
Identity = 48/87 (55.17%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  376 EIRGLDATEEQLNTLEAIRRLLLRVEAAHAVSWLWSSSHVSSVAKAAGVTTKTATTTPASSTQLALMLPILRRR--RRGALLEPLLR 630
            E  G D  EEQL  LEA+RRLLLRVEA HA SW+W SS   SVA+ A      A T P   T+L   L ILRRR  RRG LL  L R
Sbjct:  288 ETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEP---TRLTSTLQILRRRATRRGVLLRALSR 371          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-9
Identity = 55/127 (43.31%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   17 MLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDS-GCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG*T 394
            +L +AGV+DTG AL+ AA    E  VK LLQQ    +   +L  YVN   D  G T +  SI+ G  + G R  P   +VVRLLVDAGADT SAV  K  AG      TP+      L E    G T
Sbjct:  239 VLADAGVMDTGEALITAAGRNDEAGVKLLLQQRHGTSAGGELYMYVNDTHDLVGRTPLLCSIDGG--MAGFRCSP---RVVRLLVDAGADTVSAVPLKGTAGQIGRSVTPIDFATCSLHENMDGGKT 360          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-9
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    8 ITIMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG 388
            I +ML + G +DTG  L+ AA   SE  VK LLQQ   +    D   YVN +   G T V   I    + G  R       V+RL +DAGADT S VR  +  G+    GTPLA+T  LL +++  G
Sbjct:  395 IVVMLADTGEIDTGRVLIDAAKFGSEALVKILLQQQRGKHMDWDT--YVNKKQPDGRTPVVCRIGRALRSGSPR-------VLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARG 512          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-8
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   17 MLTNAGVVDT-GIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG 388
            +LT AGV D  G  L+  A    E +V+ LL+Q  +E+    +  Y N  D SG T +  SI + +            ++VRLLVDAGADTTS VR  ++ G  +   TPLA T +LL EK  +G
Sbjct:   10 ILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKES-EMSVHAYANSSDGSGMTPLSCSIEWCSS--------GNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDG 125          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.040e-8
Identity = 54/131 (41.22%), Postives = 65/131 (49.62%), Query Frame = 2
Query:    2 VGITIMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEKKFEG*T 394
            VGI  ML +AGVVD G AL  AAA   E +VK LL+Q E +        YVN  +  G T +  +I  G             ++VRLLVDAGADTT+A R     G      T L     LL EKK +G T
Sbjct:  234 VGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGK-HSASRSAYVNKLNRFGLTPLLENITCGH---------CSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGDT 354          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-7
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = 2
Query:    8 ITIMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFGTPLAHTNALLGEK 376
            I ++LTNAGVVDTG+ALV AA    E  +K LL+Q  R     D   YVN RD  G T +   I                +VVRLLV+AGADTTS V  ++  G      TPL  T   + +K
Sbjct:  235 IMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQA-RARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP-----------RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDK 345          
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.000e-7
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   14 IMLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVN-FRDDSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIAGIFQNFG-TPLAHTNALLGEKKFEG 388
            ++L   GVVDTG AL+ AA     VAVK LL++ + +A       YVN  RD  G T V  +++ GA  G +  P    K+VRLLVDAGA+TT AV    I   ++    TPLA T  LL E + +G
Sbjct:  234 VLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADA-----YVNGTRDPYGRTPVMCAVDVGA--GRLCSP----KIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDG 349          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13251.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LB36_ECTSI6.390e-1638.42EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI2.740e-1041.94EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FYA6_ECTSI5.780e-1042.74Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G1Y3_ECTSI1.200e-955.17EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5JL33_9PHAE3.100e-943.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA9_9PHAE5.000e-939.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSC5_ECTSI2.830e-839.20EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FY91_ECTSI7.040e-841.22EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5KJA9_9PHAE1.210e-741.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1H7_ECTSI3.000e-742.52EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13251contigL-elsbetiae_contig13251:651..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog2880.D8LJF9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size630
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13251.2528.1prot_L-elsbetiae_contig13251.2528.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13251 890..1264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.783081-UTR-L-elsbetiae_contig13251:650..8891622815502.783081-UTR-L-elsbetiae_contig13251:650..889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13251 651..889 -
1691682929.7192752-UTR-L-elsbetiae_contig13251:650..8891691682929.7192752-UTR-L-elsbetiae_contig13251:650..889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13251 651..889 -
1622815502.815372-UTR-L-elsbetiae_contig13251:1264..12801622815502.815372-UTR-L-elsbetiae_contig13251:1264..1280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13251 1265..1280 -
1691682929.7416728-UTR-L-elsbetiae_contig13251:1264..12801691682929.7416728-UTR-L-elsbetiae_contig13251:1264..1280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13251 1265..1280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.8012948-CDS-L-elsbetiae_contig13251:889..12641622815502.8012948-CDS-L-elsbetiae_contig13251:889..1264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13251 890..1264 -
1691682929.7329452-CDS-L-elsbetiae_contig13251:889..12641691682929.7329452-CDS-L-elsbetiae_contig13251:889..1264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13251 890..1264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13251.2528.1

>prot_L-elsbetiae_contig13251.2528.1 ID=prot_L-elsbetiae_contig13251.2528.1|Name=mRNA_L-elsbetiae_contig13251.2528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MLTNAGVVDTGIALVRAAACCSEVAVKCLLQQLEREAFPTDLVRYVNFRD
DSGCTAVFRSINFGAQIGGVRLPPSPTKVVRLLVDAGADTTSAVRAKDIA
GIFQNFGTPLAHTNALLGEKKFEG*
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mRNA from alignment at L-elsbetiae_contig13251:651..1280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13251.2528.1 ID=mRNA_L-elsbetiae_contig13251.2528.1|Name=mRNA_L-elsbetiae_contig13251.2528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig13251:651..1280- (Laminarionema elsbetiae ELsaHSoW15)
TGTCGGCATCACGATCATGCTGACGAACGCCGGAGTGGTCGACACAGGAA TAGCACTCGTCCGCGCAGCGGCGTGTTGCAGTGAGGTGGCAGTCAAGTGC TTGTTGCAGCAGCTGGAGCGGGAGGCATTCCCGACCGACTTAGTCCGATA CGTTAACTTCCGCGATGATAGCGGCTGCACGGCCGTGTTCCGTAGCATCA ACTTTGGCGCTCAAATCGGGGGCGTGCGGCTGCCACCTTCACCAACGAAG GTGGTGCGTTTGCTTGTGGACGCCGGAGCAGATACAACGTCAGCTGTTCG AGCGAAGGACATAGCAGGCATTTTTCAAAACTTTGGCACGCCATTGGCTC ACACCAACGCACTCCTTGGTGAGAAGAAATTCGAGGGTTAGACGCGACAG AGGAGCAGCTGAATACGTTGGAAGCCATCCGCCGGTTGCTTCTGCGTGTA GAGGCAGCGCATGCCGTTTCTTGGCTGTGGTCCAGCAGCCATGTCTCCTC TGTCGCCAAGGCTGCAGGGGTTACAACCAAGACCGCCACGACGACTCCGG CTAGCAGCACGCAGCTGGCATTGATGCTTCCGATCCTGAGACGCAGAAGA CGTGGTGCGCTTCTGGAGCCTCTGCTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13251:651..1280-

>mRNA_L-elsbetiae_contig13251.2528.1 ID=mRNA_L-elsbetiae_contig13251.2528.1|Name=mRNA_L-elsbetiae_contig13251.2528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig13251:651..1280- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGACGAACGCCGGAGTGGTCGACACAGGAATAGCACTCGTCCGCGC
AGCGGCGTGTTGCAGTGAGGTGGCAGTCAAGTGCTTGTTGCAGCAGCTGG
AGCGGGAGGCATTCCCGACCGACTTAGTCCGATACGTTAACTTCCGCGAT
GATAGCGGCTGCACGGCCGTGTTCCGTAGCATCAACTTTGGCGCTCAAAT
CGGGGGCGTGCGGCTGCCACCTTCACCAACGAAGGTGGTGCGTTTGCTTG
TGGACGCCGGAGCAGATACAACGTCAGCTGTTCGAGCGAAGGACATAGCA
GGCATTTTTCAAAACTTTGGCACGCCATTGGCTCACACCAACGCACTCCT
TGGTGAGAAGAAATTCGAGGGTTAGATGCTGACGAACGCCGGAGTGGTCG
ACACAGGAATAGCACTCGTCCGCGCAGCGGCGTGTTGCAGTGAGGTGGCA
GTCAAGTGCTTGTTGCAGCAGCTGGAGCGGGAGGCATTCCCGACCGACTT
AGTCCGATACGTTAACTTCCGCGATGATAGCGGCTGCACGGCCGTGTTCC
GTAGCATCAACTTTGGCGCTCAAATCGGGGGCGTGCGGCTGCCACCTTCA
CCAACGAAGGTGGTGCGTTTGCTTGTGGACGCCGGAGCAGATACAACGTC
AGCTGTTCGAGCGAAGGACATAGCAGGCATTTTTCAAAACTTTGGCACGC
CATTGGCTCACACCAACGCACTCCTTGGTGAGAAGAAATTCGAGGGTTAG
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