mRNA_L-elsbetiae_contig13188.2490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13188.2490.1
Unique NamemRNA_L-elsbetiae_contig13188.2490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A6H5JTQ7_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTQ7_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 9.790e-149
Identity = 233/301 (77.41%), Postives = 244/301 (81.06%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQVRLGAR 906
            QRDFSTAMSNKDQ+GFYRGTRRYV ILLAAAPLFALS+FVQGKLGLDWRRWLTEHLCGLYF NR+FYALKIGYLS  KTT                                      RGGI + V  +DNPDQRIGEDISTFT+NCIDVVVVFVG++LKVGSFVGVLLSISPRLTAFVV YS  GTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKE +K LLEKVV N HLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGE+EFGVISQ  +  R
Sbjct:   63 QRDFSTAMSNKDQDGFYRGTRRYVVILLAAAPLFALSKFVQGKLGLDWRRWLTEHLCGLYFQNRSFYALKIGYLSSSKTTASSPGTEGQQQDGAEGNGSAAAIWFGAREEEQQ-----RGGIDNPVSAVDNPDQRIGEDISTFTKNCIDVVVVFVGSVLKVGSFVGVLLSISPRLTAFVVAYSVAGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEVVKGLLEKVVGNTHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEIEFGVISQTAMAFR 358          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A2K1JHE7_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHE7_PHYPA)

HSP 1 Score: 194 bits (492), Expect = 4.860e-54
Identity = 112/295 (37.97%), Postives = 163/295 (55.25%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            QRDFSTA+S+KD   FYR  RR+V I++ AAPL +  +++Q  L L+WR W++E+L   YF NRA++ LK+     GK                                                  +DNPDQRI ED+ +F +N ++++ +F G  L V  F GVL +I+P L  F+VVY+  GTL T   FG RL  L F+  +REA FR+ LVRVR++ E IAFY GE  E    K  L  +V N+   +  +  L++F+N + +   ++P ++VA RYF+G+++FGVISQ
Sbjct:    5 QRDFSTALSSKDVAEFYRAIRRFVMIVIFAAPLDSFYQYMQELLSLEWRAWMSEYLLSSYFSNRAYFDLKMD----GK--------------------------------------------------VDNPDQRICEDVYSFVKNSVEIIALFSGKFLSVIGFAGVLWTIAPELVYFLVVYATFGTLVTVKGFGGRLTSLKFKALQREAEFRYSLVRVRDNVESIAFYGGESHEAATTKDFLVSMVENVRELIVWNRHLSLFNNIYEFSMIIVPSIIVAPRYFSGQVQFGVISQ 245          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A2R6WQG5_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WQG5_MARPO)

HSP 1 Score: 193 bits (491), Expect = 2.330e-53
Identity = 114/296 (38.51%), Postives = 165/296 (55.74%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIH-LRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            QRDFSTA+S K+ EGF+R   R++ I++ A PLFA   ++Q  L L+WR WL++ L   YF NRA++ LK+     GK                                                  +DNPDQRI ED ++F RN ++++ +     L + +F GVL SI+P L  F++ YS +GT  T  LFG +L  L F+G +REA+FR+ LVR+R++AE IAFY GE  E + IK     +++N   L LW    L +FSN++ +   V+P +++A RYFAGE+EFGVI+Q
Sbjct:   74 QRDFSTAISEKNVEGFHRAVMRFIGIVIIATPLFATYHYLQDLLALEWRIWLSDLLLSNYFSNRAYFDLKM----EGK--------------------------------------------------LDNPDQRICEDAASFVRNSVEIIALIGSKFLNICAFTGVLWSIAPELVYFLLGYSVIGTYVTVRLFGKKLMQLQFQGLQREADFRYSLVRIRDNAESIAFYSGETHEAKTIKGFFSALIANSRDLILW-RRHLGLFSNAYEFSMLVVPSIIIAPRYFAGEVEFGVIAQ 314          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A1Y1HP97_KLENI (ATP-binding cassette transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP97_KLENI)

HSP 1 Score: 191 bits (486), Expect = 7.930e-53
Identity = 105/301 (34.88%), Postives = 160/301 (53.16%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQVRLGAR 906
            QRDFSTA+S KDQ  F++   R++ IL+ A PLFA+  +VQ  L L+WR W+T  L   YF  RAF+ LK+                                                         +DNPDQRI +D+  F    + +VV     +L   +F GVL S+SP L  F++ YS +GTL    +FG ++ HL +E   R+A+FR+ +VRVRE+AE IAFYRGE+ E   +   + ++++ +  R+     L++F N++ + T V+P +++A RYFAG++EFGV++Q  +  R
Sbjct:   48 QRDFSTALSQKDQPAFWKAVSRFLGILVVATPLFAVYDYVQDLLALEWREWMTNLLVSNYFARRAFFDLKL------------------------------------------------------ENTLDNPDQRICDDVRNFVGGSVGLVVFTTNKILNSIAFTGVLWSVSPELVIFLLAYSIIGTLVALKIFGKKMVHLQYEALARQADFRYSMVRVRENAESIAFYRGEERELHSVSAFVRRMIAVLRHRIVWSRHLSLFGNAYEYATLVIPSVIIAPRYFAGQIEFGVVTQAGMAFR 294          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: K8EDS1_9CHLO (ABC transporter ATP-binding protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EDS1_9CHLO)

HSP 1 Score: 191 bits (486), Expect = 1.850e-52
Identity = 110/295 (37.29%), Postives = 159/295 (53.90%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            QRD STA+SNKDQ+GFY   +RY+ +++ AAPLFAL  +V+    L WR+++TE +  +Y  +  +Y+LK                                                       V  +DNPDQRIGED+  F  +   + +  V  +  + +F  VL  ISP+L  F   YS +GT  TTA+FG +L HL FE  K+EAN RF LVR+REHAE IA YRG K E + + R L++V+     ++  +  L +F+N++ + T  LPYL++A  YF GE+EFGV++Q
Sbjct:   67 QRDMSTALSNKDQDGFYNAIQRYIYVVVIAAPLFALYDYVKSLSALHWRKYMTEKMMTMYCEHDNYYSLKFNNSVIATANQNNEGSGDVQKEA-------------------------------TVTTLDNPDQRIGEDVRGFVHSMTTLTLAIVHKIFSMSAFFAVLYQISPKLLFFCFAYSMIGTYVTTAVFGGKLMHLHFEILKKEANMRFFLVRLREHAESIALYRGAKRELKTLLRTLQQVIKIQKEKIVWNRHLDLFTNAYEFATFCLPYLIIAPLYFKGEVEFGVVTQ 330          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A1E5QTK5_9CHRO (ABC transporter ATP-binding protein n=1 Tax=Cyanobacterium sp. IPPAS B-1200 TaxID=1562720 RepID=A0A1E5QTK5_9CHRO)

HSP 1 Score: 187 bits (475), Expect = 1.710e-51
Identity = 114/296 (38.51%), Postives = 162/296 (54.73%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIH-LRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            Q +  + ++ KD+  F+   R ++T+LL   PLFA   +VQ KLGL WR+WLTE+  G YF NR+FY L   Y                                                     K IDNPDQRI EDI  FT++ +  ++V V ++L+V +F  VL SIS +L  F++VY+  GT+ TT +FG +L +L F   K+EANFRFGLVRVRE++E IAFY+GEK E+  +K L   V  N + L +W +  L +F N+F +L  V+P +VVA    +GE+E G +S+
Sbjct:   54 QGELISTLAAKDEAIFWSAVRSFLTVLLIYVPLFASFSYVQSKLGLYWRKWLTENFLGRYFANRSFYQLTAKY-----------------------------------------------------KEIDNPDQRISEDIRGFTQDSLLFLLVVVQSVLQVIAFSAVLWSISQQLVIFLLVYAIAGTIITTGVFGQKLINLNFAQLKKEANFRFGLVRVRENSESIAFYQGEKQEENHLKNLFNDVYQNFNSLIVWQELYLGLFVNTFEFLPYVIPAIVVAPSVLSGELEVGKVSE 296          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A2K8WNI0_9CHRO (ABC-type transport system ATPase component YddA n=3 Tax=Cyanobacterium TaxID=102234 RepID=A0A2K8WNI0_9CHRO)

HSP 1 Score: 186 bits (472), Expect = 4.650e-51
Identity = 113/296 (38.18%), Postives = 162/296 (54.73%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIH-LRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            Q +  + ++ KD+  F+   R ++T+L+   PLFA   +VQ KLGL WR+WLTE+  G YF NR+FY L   Y                                                     K IDNPDQRI EDI  FT++ +  ++V V ++L+V +F  VL SIS +L  F++VY+  GT+ TT +FG +L +L F   K+EANFRFGLVRVRE++E IAFY+GEK E+  +K L   V  N + L +W +  L +F N+F +L  V+P +VVA    +GE+E G +S+
Sbjct:   54 QGELISTLAAKDEALFWSAVRSFLTVLVIYVPLFASFSYVQSKLGLYWRKWLTENFLGRYFANRSFYQLTAKY-----------------------------------------------------KEIDNPDQRISEDIRGFTQDSLLFLLVVVQSVLQVIAFSAVLWSISQQLVIFLLVYAIAGTIITTGVFGQKLINLNFAQLKKEANFRFGLVRVRENSESIAFYQGEKQEENHLKNLFNDVYQNFNSLIVWQELYLGLFVNTFEFLPYVIPAIVVAPSVLSGELEVGKVSE 296          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A813G6F7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6F7_POLGL)

HSP 1 Score: 187 bits (475), Expect = 8.480e-51
Identity = 116/301 (38.54%), Postives = 155/301 (51.50%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQVRLGAR 906
            QR F+TA+SNKD  GF+ G   YV IL+   PLFAL+ FV+G+    W+ +L + L   YF +R FY L +    P  T                                       R         +DNPDQR+ +DI T     + ++   VG +  + SF  VL SISP L AF V+Y+A  ++ T ALF  RL+HLI +G  ++A+ RF LVRVR+HAEEIAF  G+  E   I  +  + +   +  L  +A L  F N F ++T VLPY+ VA  YFAGEMEFGVISQ     R
Sbjct:   74 QRSFTTALSNKDVPGFWAGITEYVYILVVCCPLFALTTFVEGRFATQWQVYLCQQLTDRYFSHRTFYTLTLQ--QPPSTRNQEEGQEAQVEKSPHSASN-------------------RSKDEAGRVEVDNPDQRLTDDIETVASQSVRLMTTVVGKVANIISFSYVLYSISPPLLAFAVMYAAGASVLTDALFTQRLQHLITKGISQDADLRFRLVRVRQHAEEIAFLGGDVAENRVISDIFRERIQTKNSELLLNAFLGTFQNYFSYMTVVLPYIAVAAHYFAGEMEFGVISQTATSFR 353          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A846DS08_9CYAN (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Moorena sp. SIO2B7 TaxID=2607823 RepID=A0A846DS08_9CYAN)

HSP 1 Score: 173 bits (439), Expect = 1.440e-48
Identity = 101/293 (34.47%), Postives = 159/293 (54.27%), Query Frame = 1
Query:   19 TAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRL-WCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQVR 894
            +A+S KD+  F+     ++ +L+   PLFA   +++ KLGL WRRWLT H  G YF NR+FY L                                                   G ++A   IDNPDQRI EDI +F++  +  +++ +G++L+V +F GVL  IS  L  F+V+Y+  GT+ TT  FG RL  L F+  K+EANFRFGLVR+RE+AE IAFY+GE  E + +     +V  N +L + W +  L +F+N++ ++  ++P +++A   F+G+ E G +++ +
Sbjct:   58 SALSAKDEPRFWEAVGVFLGVLIVYVPLFAGYGYLRDKLGLFWRRWLTNHFLGQYFSNRSFYDL---------------------------------------------------GNSNA--EIDNPDQRISEDIRSFSQESLRFLLIIIGSILQVIAFSGVLWGISKPLVIFLVIYAFGGTIITTGFFGRRLVKLNFDQLKKEANFRFGLVRIRENAESIAFYQGENQESKRVSNRFTEVFRNFNLLIVWQELYLGLFTNTYEFMLYIIPAVILAPSVFSGDFEVGKVTEAQ 297          
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Match: A0A8J4GS58_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GS58_9CHLO)

HSP 1 Score: 181 bits (458), Expect = 6.230e-48
Identity = 126/295 (42.71%), Postives = 172/295 (58.31%), Query Frame = 1
Query:    4 QRDFSTAMSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLCGLYFGNRAFYALKIGYLSPGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGALLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAKREANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCDAQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQ 888
            QRDFSTA+S KD  GFY   R++V I++ AAPLF+ + +V+ +L L WR +LT  L   YF NRAFY ++      G T                  XXXXXXXXXXXXX         GGI       DNPDQRI +D+ +F R+ + + +     +    +F GVL  +S  L  F+ VY+A+GT  TTA+FG  L  L +    REA+ RF LVRVRE+AE IAFYRGE GE+  +   L+ V++    R+   A   ++++ + + T ++P L+ A RYFAGE+EFGVISQ
Sbjct:  102 QRDFSTALSEKDVSGFYAAVRKFVVIIIIAAPLFSFNAWVEERLVLAWRAYLTRRLTRAYFANRAFYHIQ----QRGDTMAAGAIINPSSTAALTEAXXXXXXXXXXXXXSIGG-----GGI-------DNPDQRICDDVGSFVRSSVSLSLTVCRKIFSCVAFAGVLWGVSGSLVLFMFVYAAVGTFVTTAMFGRVLTSLFYRQLAREADLRFSLVRVRENAESIAFYRGEGGERVRVLSRLDAVLAVAADRIRWSALYDLWTSVYSYATILVPSLLTAPRYFAGEIEFGVISQ 380          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13188.2490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTQ7_9PHAE9.790e-14977.41ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A2K1JHE7_PHYPA4.860e-5437.97Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A2R6WQG5_MARPO2.330e-5338.51Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A1Y1HP97_KLENI7.930e-5334.88ATP-binding cassette transporter n=1 Tax=Klebsormi... [more]
K8EDS1_9CHLO1.850e-5237.29ABC transporter ATP-binding protein n=1 Tax=Bathyc... [more]
A0A1E5QTK5_9CHRO1.710e-5138.51ABC transporter ATP-binding protein n=1 Tax=Cyanob... [more]
A0A2K8WNI0_9CHRO4.650e-5138.18ABC-type transport system ATPase component YddA n=... [more]
A0A813G6F7_POLGL8.480e-5138.54Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A846DS08_9CYAN1.440e-4834.47ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A8J4GS58_9CHLO6.230e-4842.71Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13188contigL-elsbetiae_contig13188:298..3817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.1
Seed ortholog evalue1.7e-117
Seed eggNOG ortholog2880.D8LLD8
Preferred nameABCD2
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K15628
KEGG TC3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
EggNOG free text desc.long-chain fatty acid transporter activity
EggNOG OGsCOG4178@1,KOG0064@2759
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-27_002260.1
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons5
Model size918
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13188.2490.1prot_L-elsbetiae_contig13188.2490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13188 298..3793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.6188323-CDS-L-elsbetiae_contig13188:297..4771622815496.6188323-CDS-L-elsbetiae_contig13188:297..477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 298..477 -
1691682926.888017-CDS-L-elsbetiae_contig13188:297..4771691682926.888017-CDS-L-elsbetiae_contig13188:297..477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 298..477 -
1622815496.6359508-CDS-L-elsbetiae_contig13188:989..10861622815496.6359508-CDS-L-elsbetiae_contig13188:989..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 990..1086 -
1691682926.9002142-CDS-L-elsbetiae_contig13188:989..10861691682926.9002142-CDS-L-elsbetiae_contig13188:989..1086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 990..1086 -
1622815496.6516051-CDS-L-elsbetiae_contig13188:1472..17261622815496.6516051-CDS-L-elsbetiae_contig13188:1472..1726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 1473..1726 -
1691682926.9128087-CDS-L-elsbetiae_contig13188:1472..17261691682926.9128087-CDS-L-elsbetiae_contig13188:1472..1726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 1473..1726 -
1622815496.6691532-CDS-L-elsbetiae_contig13188:2781..27911622815496.6691532-CDS-L-elsbetiae_contig13188:2781..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 2782..2791 -
1691682926.9238558-CDS-L-elsbetiae_contig13188:2781..27911691682926.9238558-CDS-L-elsbetiae_contig13188:2781..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 2782..2791 -
1622815496.6794167-CDS-L-elsbetiae_contig13188:3440..37931622815496.6794167-CDS-L-elsbetiae_contig13188:3440..3793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 3441..3793 -
1691682926.9318814-CDS-L-elsbetiae_contig13188:3440..37931691682926.9318814-CDS-L-elsbetiae_contig13188:3440..3793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13188 3441..3793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.6904702-UTR-L-elsbetiae_contig13188:3793..38171622815496.6904702-UTR-L-elsbetiae_contig13188:3793..3817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13188 3794..3817 -
1691682926.9399877-UTR-L-elsbetiae_contig13188:3793..38171691682926.9399877-UTR-L-elsbetiae_contig13188:3793..3817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13188 3794..3817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13188.2490.1

>prot_L-elsbetiae_contig13188.2490.1 ID=prot_L-elsbetiae_contig13188.2490.1|Name=mRNA_L-elsbetiae_contig13188.2490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MSNKDQEGFYRGTRRYVTILLAAAPLFALSRFVQGKLGLDWRRWLTEHLC
GLYFGNRAFYALKIGYLSPGKTTTTAAATMGEREESGEVAGPAGGEDAAC
EEEEEEEEEEQRGGITHAVKRIDNPDQRIGEDISTFTRNCIDVVVVFVGA
LLKVGSFVGVLLSISPRLTAFVVVYSALGTLSTTALFGARLKHLIFEGAK
REANFRFGLVRVREHAEEIAFYRGEKGEKEGIKRLLEKVVSNIHLRLWCD
AQLAVFSNSFMWLTAVLPYLVVAERYFAGEMEFGVISQVRLGARGEEG
back to top

mRNA from alignment at L-elsbetiae_contig13188:298..3817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13188.2490.1 ID=mRNA_L-elsbetiae_contig13188.2490.1|Name=mRNA_L-elsbetiae_contig13188.2490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3520bp|location=Sequence derived from alignment at L-elsbetiae_contig13188:298..3817- (Laminarionema elsbetiae ELsaHSoW15)
TCGCAGCGAGATTTCTCCACGGCCATGAGCAACAAGGACCAGGAGGGCTT CTACCGGGGCACCCGCAGGTACGTCACCATCCTGCTGGCCGCGGCGCCCC TTTTCGCGCTCTCGCGGTTCGTGCAGGGCAAGCTGGGGCTGGACTGGAGG AGGTGGCTCACCGAGCACCTCTGCGGCCTTTACTTCGGCAACCGCGCGTT CTACGCCCTCAAGATCGGGTACCTCTCGCCCGGCAAGACCACCACCACGG CGGCGGCGACGATGGGAGAAAGAGAGGAGAGCGGGGAGGTTGCAGGCCCC GCCGGTGGCGAGGATGCCGCTTGCGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGCAGCGGGGTGGCATCACACACGCGTTGCTGCTGCGGCGGGAAAACG AAAAAAAAAGCTCGCCATCGGAAGCGAGGTATGTACTATAATGATTCTCC GGAACCCCTCCGATTTTTTTTTTTTGCGGACGCGATTTGGGGGCCACCTA CTTTGTCACCGCCAAGGCTCATCACACAGAACACGCCTTCCCACCAAATC ACCAGAGAAGTTCAACACAGTCATTAACTTTGTCCGCAAGGAGCTTTTAG GTCATGAATCGACGTTGAACCGAAGAAATGTTGTCCATCGCCACTGGAAT CAAGTCTGTTGCAGTTGTTTTTGCGTCTTTCGGAAGCCCAACTTTACGCC TGTTGGCGGCCATGGTAGAGTTGCCTAAGTCGTCTGACGGTCGGCCACGG TGAAGACATGGTACTATAAGACCGAATAACGCGTTGCTAAAAACTATGAT CACCACCACAGCGTTCGCAGTCGGCCTGCTGAGGTTGGAATGGAGGAGCT CTATGATGTGCAGCGGGGTAGCCACAGAGAAATACCAAGAGTCTAATCCC CAAGATTTTCAGAAGAGTGAAACACGATCACCCGAACAGACCTTTTAGGC CGGTTGGCTGGCAACGTAGAGTTGCTCAAATCATCTGAAACTCGGCAGGT GAACTTCTTGGTATGCACAGCCGGAGGGTAAAACGCGTTGCTAATTTTTT GATCACCACTACAGCCGGAGGTGTATCGGATTGATCGCCCCATCCATCCC ACAGGAGGAACGTATTTTCTTGGCGTCGTCGTGAGGTACAGCCGCGACCG AAATTTGCTGGAAACAGCGTCACGGAGCCCCCACCAACACGTGTGGTCAA CAACCCGGTCAGCGCGGTGAGTTGGGGGCTCGGCTGCGCGCGGTTTCGGT TGGTGTCTACAGTTGTTTATGTTTTGTTTCATGTACAAAGATAGGAACCG CTGTCTTTGTTACACATGGACTCGGTCTCGCTGTTCCCGTGTGGGTCGCA GTTCACGCGCGCTGCCCCGTTCGTGGGCCGCCAGATGATGGACGAAGATG CAAAATCAAGCCAGCGGGCCGCCCACCCCTGGCCTGCGGACTGCGGGGAC CCATCTGCTTACGTGGAGACTCGTAACGTTGGCGGCGGCGGGGGGGGGAG AAAGAGGCGAGACTCTTTAAACTCCAGCCAACCAGTGTGATTTTGCTTTT TTAAGACTGGTGCTTTGCAAGGACAAAAAATCCAACCAAGGACAAAAAAT CCAACCAGGGAGTGAGACCATGTTTTCATTGTAGCCGTCTTTTGGTCGCT CGTGAATTGGTCACTGGGCAGCAAATCTCTTCCGTCGGCCGGGCTCCTCC TCCCCCACCCCCTCCAGACCTTCAGCCCTTCATCGTTTCATACCGCTCGC TCTTCTCGTGCTTACATACTACAGCTTTAGTGCGCTGTTTTCGGCGTTCA ACACCGAGGTGTAGTACCTAACTTATGTTATCCGTAGGTAAGTATGTACA GTACCACATAATACTTGGGTGTGCAAAAGAGTTCGTCGCGGCATGGCGTG GACGAACCCCCCGCACACAGGAGACGCGGGGCGTTGAGACACAGACAGGC AAGGGCAACCAGCCATTCTCGCTCTCCCGGTGCCACTTTTCGACAGGGTG ACGACGACGACTGGCCGACTGAAAAGACGGCTGGCGGGCTGGGTAACAAC TGATTCGGCTGAACTACGTATGTACTACCCTCTCCGAGCAGATCGATAAC CCCGACCAGCGCATCGGAGAGGACATCTCGACCTTCACCAGGAACTGCAT CGACGTGGTGGTGGTCTTCGTGGGGGCGCTGCTCAAGGTGGGGTCCTTCG TCGGGGTCCTCCTGTCCATATCCCCCCGCCTCACCGCCTTCGTGGTGGTG TACAGCGCCCTGGGCACCCTGAGCACCACGGCCCTCTTCGGCGCGCGCCT GAAGCACCTCATCTTCGAGGGGGCCAAGCGAGAGGCGAACTTCCGGTGAG CGACGTTTGTGCCCGGTTGGTGGTGGGGGTTCTGGGGTTGGGGTGGGGGT GTGATTTTACACTGTAATATATAAATAGTCAGTTACACCACCGCCATGCG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTGAGGGCCTTTGGTAGTT TTTGGTGGTTGCTCGCTTCTTACGCAACTAACCCGTGTGCTGAATGGGCG TAGTTTTAGGGCAGAACGCTTGAACCTCCTCGTGCGTCTTCTTCGACGGG GCGTGTGTGTGTGTGGGTGGTGGTGGGGGTGGGTGGGTGTGTGGGGGGAG GGTTGTCGTGAAAGCGCCTGCCCGGCGGCCTGGCGGCCTGGCTGGCTGAT TTCCATACGTTGCGTGCACATTTACCGGCAGGTTCGGGCTCGTGAGAGTA CGCGAACACGCGGAGGAGATCGCCTTCTACCGCGGAGAGAAGGGCGAGAA GGAGGGCATCAAGAGGTTGCTTGAAAAGGTGAGACAAAGAGATGCGCGAC CTTGTGTGGTACGCATTTATTTACATCAACTTGCAGCAGCAAATTCCTCT TTTGCTGGATTTAGAGCTCCATTGACTCTTTGCCCTTTGCTTCTCTATCC CGTGGCGTCTGCTGGATGATCTGGTGGTGGCAATCTCGTTTGTCGCCGTG TGCAATCTCTTCTCCCCCTCACCCCCCCCCCACTCCACCCCACCCCCCAT GTTTTTGGGTACCTATATTCCATTGGCCAAACGCGCCACTTTTTAGTGGG CGCTTTCGCCCACGAGTGCCTTCACCTCGTCCCCCGCGCAAGCTGTCGGC AGCGAGACGTAGATGACCGCACCCCGCCGTCGAGATTGTAGGACAATGCC TCTCCCTCTACCTCTGTGCCTGTTGTTGTTGTTGTTGTTGTTGATTATAT TTTTATATTTTGGTCTGTTGTTTTTCCCCCGTCCCGGCCGATGTGGTCCG GTCTGCCGTTCGTGTGTATGCATGCTATTTACGCGTAAAGGTGGTGAGCA ACATCCACCTGAGGCTGTGGTGTGACGCTCAGCTGGCGGTGTTTTCGAAC AGCTTCATGTGGCTCACCGCCGTGCTCCCGTACCTTGTCGTGGCCGAGCG GTACTTCGCGGGGGAGATGGAGTTCGGGGTAATCTCCCAGGTGAGGTTGG GGGCGCGGGGAGAAGAAGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13188:298..3817-

>mRNA_L-elsbetiae_contig13188.2490.1 ID=mRNA_L-elsbetiae_contig13188.2490.1|Name=mRNA_L-elsbetiae_contig13188.2490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig13188:298..3817- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAACAAGGACCAGGAGGGCTTCTACCGGGGCACCCGCAGGTACGT
CACCATCCTGCTGGCCGCGGCGCCCCTTTTCGCGCTCTCGCGGTTCGTGC
AGGGCAAGCTGGGGCTGGACTGGAGGAGGTGGCTCACCGAGCACCTCTGC
GGCCTTTACTTCGGCAACCGCGCGTTCTACGCCCTCAAGATCGGGTACCT
CTCGCCCGGCAAGACCACCACCACGGCGGCGGCGACGATGGGAGAAAGAG
AGGAGAGCGGGGAGGTTGCAGGCCCCGCCGGTGGCGAGGATGCCGCTTGC
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCGGGGTGGCATCACACA
CGCATGAGCAACAAGGACCAGGAGGGCTTCTACCGGGGCACCCGCAGGTA
CGTCACCATCCTGCTGGCCGCGGCGCCCCTTTTCGCGCTCTCGCGGTTCG
TGCAGGGCAAGCTGGGGCTGGACTGGAGGAGGTGGCTCACCGAGCACCTC
TGCGGCCTTTACTTCGGCAACCGCGCGTTCTACGCCCTCAAGATCGGGTA
CCTCTCGCCCGGCAAGACCACCACCACGGCGGCGGCGACGATGGGAGAAA
GAGAGGAGAGCGGGGAGGTTGCAGGCCCCGCCGGTGGCGAGGATGCCGCT
TGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCGGGGTGGCATCAC
ACACGCGGTAAAACGCGGTAAAACGCATCGATAACCCCGACCAGCGCATC
GGAGAGGACATCTCGACCTTCACCAGGAACTGCATCGACGTGGTGGTGGT
CTTCGTGGGGGCGCTGCTCAAGGTGGGGTCCTTCGTCGGGGTCCTCCTGT
CCATATCCCCCCGCCTCACCGCCTTCGTGGTGGTGTACAGCGCCCTGGGC
ACCCTGAGCACCACGGCCCTCTTCGGCGCGCGCCTGAAGCACCTCATCTT
CGAGGGGGCCAAGCGAGAGGCGAACTTCCGATCGATAACCCCGACCAGCG
CATCGGAGAGGACATCTCGACCTTCACCAGGAACTGCATCGACGTGGTGG
TGGTCTTCGTGGGGGCGCTGCTCAAGGTGGGGTCCTTCGTCGGGGTCCTC
CTGTCCATATCCCCCCGCCTCACCGCCTTCGTGGTGGTGTACAGCGCCCT
GGGCACCCTGAGCACCACGGCCCTCTTCGGCGCGCGCCTGAAGCACCTCA
TCTTCGAGGGGGCCAAGCGAGAGGCGAACTTCCGGTTCGGGCTCGTGAGA
GTACGCGAACACGCGGAGGAGATCGCCTTCTACCGCGGAGAGAAGGGCGA
GAAGGAGGGCATCAAGAGGTTGCTTGAAAAGGTTCGGGCTCGTGAGAGTA
CGCGAACACGCGGAGGAGATCGCCTTCTACCGCGGAGAGAAGGGCGAGAA
GGAGGGCATCAAGAGGTTGCTTGAAAAGGTGGTGAGCAACATCCACCTGA
GGCTGTGGTGTGACGCTCAGCTGGCGGTGTTTTCGAACAGCTTCATGTGG
CTCACCGCCGTGCTCCCGTACCTTGTCGTGGCCGAGCGGTACTTCGCGGG
GGAGATGGAGTTCGGGGTAATCTCCCAGGTGAGGTTGGGGGCGCGGGGAG
AAGAAGGGGTGGTGAGCAACATCCACCTGAGGCTGTGGTGTGACGCTCAG
CTGGCGGTGTTTTCGAACAGCTTCATGTGGCTCACCGCCGTGCTCCCGTA
CCTTGTCGTGGCCGAGCGGTACTTCGCGGGGGAGATGGAGTTCGGGGTAA
TCTCCCAGGTGAGGTTGGGGGCGCGGGGAGAAGAAGGG
back to top