mRNA_L-elsbetiae_contig1310.2444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1310.2444.1
Unique NamemRNA_L-elsbetiae_contig1310.2444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1310.2444.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.920e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   85 VNSTNMSGATPLSCAIGGMGGEVGECAALLRAAGGVVRLVEETIAPGSIIDV 240
            +   +MSGATPLSCA+GG GG  GECA LLRA+GG+VRLV++TI+ GSI+DV
Sbjct:   46 IEGKHMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDV 97
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BLAST of mRNA_L-elsbetiae_contig1310.2444.1 vs. uniprot
Match: M2RK87_TREDN (Uncharacterized protein n=1 Tax=Treponema denticola US-Trep TaxID=999440 RepID=M2RK87_TREDN)

HSP 1 Score: 50.1 bits (118), Expect = 1.830e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    7 GFSALHIAATRNDPDTIRVLLNMKVDVNSTNMSGATPLSCAI 132
            G S LHIAA +NDP  +R+L+NM  D+ + N +GATPL+ A+
Sbjct:   66 GNSLLHIAAVKNDPIIVRLLINMDADIEAKNNTGATPLAAAL 107
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BLAST of mRNA_L-elsbetiae_contig1310.2444.1 vs. uniprot
Match: Q73J83_TREDE (Ankyrin repeat protein n=10 Tax=Treponema denticola TaxID=158 RepID=Q73J83_TREDE)

HSP 1 Score: 50.1 bits (118), Expect = 3.580e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    7 GFSALHIAATRNDPDTIRVLLNMKVDVNSTNMSGATPLSCAI 132
            G S LHIAA +NDP  +R+L+NM  D+ + N +GATPL+ A+
Sbjct:   66 GNSLLHIAAVKNDPIIVRLLINMDADIEAKNNTGATPLAAAL 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1310.2444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTN3_ECTSI7.920e-1467.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M2RK87_TREDN1.830e-552.38Uncharacterized protein n=1 Tax=Treponema denticol... [more]
Q73J83_TREDE3.580e-552.38Ankyrin repeat protein n=10 Tax=Treponema denticol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1310contigL-elsbetiae_contig1310:20428..23249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Exons2
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.760862-CDS-L-elsbetiae_contig1310:20429..205701622815491.760862-CDS-L-elsbetiae_contig1310:20429..20570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1310 20430..20570 -
1691682924.6638062-CDS-L-elsbetiae_contig1310:20429..205701691682924.6638062-CDS-L-elsbetiae_contig1310:20429..20570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1310 20430..20570 -
1622815491.7725248-CDS-L-elsbetiae_contig1310:23150..232491622815491.7725248-CDS-L-elsbetiae_contig1310:23150..23249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1310 23151..23249 -
1691682924.6736226-CDS-L-elsbetiae_contig1310:23150..232491691682924.6736226-CDS-L-elsbetiae_contig1310:23150..23249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1310 23151..23249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1310.2444.1prot_L-elsbetiae_contig1310.2444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1310 20430..23249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1310.2444.1

>prot_L-elsbetiae_contig1310.2444.1 ID=prot_L-elsbetiae_contig1310.2444.1|Name=mRNA_L-elsbetiae_contig1310.2444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
GSGFSALHIAATRNDPDTIRVLLNMKVDVNSTNMSGATPLSCAIGGMGGE
VGECAALLRAAGGVVRLVEETIAPGSIIDV
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mRNA from alignment at L-elsbetiae_contig1310:20428..23249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1310.2444.1 ID=mRNA_L-elsbetiae_contig1310.2444.1|Name=mRNA_L-elsbetiae_contig1310.2444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2822bp|location=Sequence derived from alignment at L-elsbetiae_contig1310:20428..23249- (Laminarionema elsbetiae ELsaHSoW15)
GGATCGGGGTTCTCAGCTTTGCATATTGCTGCCACGAGAAACGACCCCGA
CACGATACGAGTTCTGCTGAACATGAAGGTCGACGTCAACTCGACAAACG
TGAGAAAGAGCAGTAGATTACAAGTCAGACCGTCCTTGACATTGTTCAAA
ATGTTTTTCACTGCTGGTCGCCCCGGTTGGTCTAGTTGGTACCCCCTAAC
ACCTTCTAGCAGGAAGGTCGTGAGCTCGGATCTCGGCGGGAGCGAATTTT
TCTTGCGAAGTTAGTTTTTTCTCTCGCTTCCGTCCCTGTCAGTGGATGGC
GCTTAGCGTGTGTACACATAGATTGCTCTGCCCGGTGCATCGCGCGTACC
AATTTTATTTCCCCTTTAGAGACTCTCTGTATGATGATAAACTTGGATGG
CAGGCGTACATGCCACGCAAATGGCCCTACTACGCAGATGGCCCTGGATT
GAAAATAATAGTGAAAGAAAAAAGAGCACGTGACGCAAACATGTGTACTC
CAGCCGCACAGTTGGCCCTCCCGACGGTGTACGGACACGTCTGGGGACGC
TCGTTGCACTATCGTGTGTTGAGTGCGCAAACAAACTTGGACGACAGGCA
GAAAAGCTAAACAGAGCGCTATCGAACGGAAATGGGTATGCCACACAACA
TTTGTATGTACCTCGGCCGCCGTTGACACTCCCGACAACGTACAGACGTC
TGAGAACACTCGTTGACTAACGTTAAAAAGAGCACGCGACGGAAACATGT
ACTTCAGCCAGCCGCACAGTTGGCACTCCCGACGGTGTGCAGACACCTCT
GGGGACGCTCGTTGCATAGCGTAAAATGCTTGGACGCAAAAATCAAATGT
AGCAAAGTACTTAAGTTATGCCAGCGTACGGTAGCGCAGAGAAGGAAGAG
CAAATGTGCCAAGCAGATGGCCATCGAACGGAAAAACCAAATGCAGCAGA
CAAAGTAGATGCTAGCGTACGGTAGCGCAAAGAAGGAAGAGCAAATAGAT
ATGCCAAGCAGATGGCCATCGAACGGAAAGAAGAGAGAGAGAATGCCACA
CAACATGAGCCACGTCGGGCTCTGAGAACCCTCGTTGCCTATTGCAAACA
CTTGGACGGCAGGCAAACATGCAAAACAATGTAATAATCGCGGAAAGTGC
AGACCCGGGTACCATCACAGCACCCACAATAATATCTATATGTAAAGGAG
TAAGGTATGTCGGTGCACCTGCTGCCGCTGATTGCTGTATGGGTGTACAT
TGTTTGGACACTAAACCAATGGGGAGGTGAAAGGAATCCTTGAGGTTCAC
TGGAGCACTATGTAAAACCCCGTTTAGAAATCGAGTAGAACTTCGCTGCA
GAGCTCGCCAAAAGTCACGCTCAACATTCGCAGCAAAAACGCATCTTTGT
ATGTTTTTTTGTGGTTTGTGCGAAATAATATACAAGCCCCAGCTGGACAC
TGCCAACAAAATGTTTTTTTACGCCGGTGGCATCGCACTTCGGAAAGACA
GCAGTAGACTAGACAAAGTAACGCTACACCTCCACAGATGACAGCCGACA
CCGATCATACCACACAGATGATGATGTGTAGGAAGCAGCGGGAACGTCTG
CGGAGTTGGAGGGTGGTGGGAAACGCAATAGACGAGACCTCTAGCTGTCC
AGATAGATTCGAAACGACGCGAGCAGCGCAGCGTCGGTTGCTGTTGCAAA
CCCTCTGATAACTCCACCTACCTGTCAACCTCTCTCTGCTGCTGACACAA
CGGGAAACAGCACCGACGCGCGCTGCTGCTGCGTGTTCACATCTCTTGAG
CTCGGTCGTCTAGTGTGGTCTGGTGTGCATTGCTGCTGTGTTATGTGTGT
CGTCATGACTACTTGCTGTAAACGAGGCATCAGGCGACAAGGTGCGACGG
TCGTATCTCATGACAAACTTGAAGTTTGATGATGACACTTGGCAGAGAGC
AGCTACGGTTGTGTGTCGAGGCGCCCGCGGAAGGAATAAGCGATTGCTTC
GTTTTTGAGAAAGATATCCCTAAAAAACGAACATTTTCGAGATCAATAGA
GTTACAACGTCTGCTCCAACCGTCGACGGCCGTATCTGATGGAAACGTTT
GAGATCTAGGTTGCCGCTTGGCACAGGGCAGCTGCTGCCGTGTGTTGAGG
TGCCCGTGCAAGGGGTAGTCGTTTGGTTTGAGTTTGAGAAAGATAGTCGC
AAAAAGCTGAAATCGATAGGGATTATAAAGTAGGAAAGGGGGTCACTTAA
AAAAAAAATGAAACATTTGAACAAAATTAAAAAAAAATGGGCTAAAAAGT
GGTCACAAGAAAAGATAGTGCTCAAACGAAAGGCCTGAAAGAACCAACCA
ATCGAAAATTGGAAAACGTCTACCTCACCGTCGACGAGGGAAAGGGATGG
CTGAACCCTTCTCGCGACAAAAATCTTAGGCAAGCACTGCAAACGGAGGG
AATGGAGGCCTTGGCGAAAGTAACCCTTCTGTGTAACCACAGTTCAGTAC
TCTGGCAAGATGTCCTCGTGACAGGGACCCAATCGAGCACTGGAAATAAA
TGTGAAGAAGAAAAAAAAAAAACTAAAAAAAAACTGTGTGGGCGTCGAAA
GGCGATATTGTAGTCGATGTGGCGGCATAAATAATCACTTTCACCGTATT
ACTGCCGTGATGCCGAATACGCACCGCAGATGAGCGGAGCAACTCCTCTA
TCGTGCGCCATAGGCGGCATGGGAGGAGAAGTCGGGGAGTGTGCTGCATT
GCTGCGCGCAGCAGGAGGAGTTGTTCGCCTGGTAGAGGAAACGATCGCCC
CTGGTTCAATCATTGACGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1310:20428..23249-

>mRNA_L-elsbetiae_contig1310.2444.1 ID=mRNA_L-elsbetiae_contig1310.2444.1|Name=mRNA_L-elsbetiae_contig1310.2444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig1310:20428..23249- (Laminarionema elsbetiae ELsaHSoW15)
GGATCGGGGTTCTCAGCTTTGCATATTGCTGCCACGAGAAACGACCCCGA
CACGATACGAGTTCTGCTGAACATGAAGGTCGACGTCAACTCGACAAACG
GATCGGGGTTCTCAGCTTTGCATATTGCTGCCACGAGAAACGACCCCGAC
ACGATACGAGTTCTGCTGAACATGAAGGTCGACGTCAACTCGACAAACAT
GAGCGGAGCAACTCCTCTATCGTGCGCCATAGGCGGCATGGGAGGAGAAG
TCGGGGAGTGTGCTGCATTGCTGCGCGCAGCAGGAGGAGTTGTTCGCCTG
GTAGAGGAAACGATCGCCCCTGGTTCAATCATTGACGTGATGAGCGGAGC
AACTCCTCTATCGTGCGCCATAGGCGGCATGGGAGGAGAAGTCGGGGAGT
GTGCTGCATTGCTGCGCGCAGCAGGAGGAGTTGTTCGCCTGGTAGAGGAA
ACGATCGCCCCTGGTTCAATCATTGACGTG
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