mRNA_L-elsbetiae_contig13044.2410.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A6H5JF33_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF33_9PHAE) HSP 1 Score: 402 bits (1034), Expect = 1.090e-130 Identity = 217/249 (87.15%), Postives = 224/249 (89.96%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTRRGAQAQLANLSVEDRGANTRVEEDARKV-VRKEAVASVFGKKKR 1012 GKSTLLNLLSGKLEP+SGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPI ELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALI+GIQEYKGGVVLVSHDARLIA+T CELWVCEGGGRVNVHR GFEHYRRSLLRDIANAEARVEAAXXXXXXXXX ADR+GKHTRRGAQAQ + L + A VRK+AVASVFGKKKR Sbjct: 392 GKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVNVHRHGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXKERADRLGKHTRRGAQAQFSKLGLXXXXXXXXXXXXACSTEVRKKAVASVFGKKKR 640
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: D8LEI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI0_ECTSI) HSP 1 Score: 409 bits (1052), Expect = 4.920e-130 Identity = 223/249 (89.56%), Postives = 232/249 (93.17%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTRRGAQAQLANLSVEDRGANTRVEEDARKV-VRKEAVASVFGKKKR 1012 GKSTLLNLLSGKLEP+SGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPI ELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALI+GIQEYKGGVVLVSHDARLIA+T CELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEA XXXXXXXXXXXXADR+GKHTRRGAQAQ + L + +G E +AR VRK+AVASVFGKKKR Sbjct: 684 GKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAXXXXXXXXXXXXXADRLGKHTRRGAQAQFSKLGL-GKGXTEEXEVEARSTEVRKKAVASVFGKKKR 931
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7S2RHT7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHT7_9STRA) HSP 1 Score: 247 bits (630), Expect = 3.970e-74 Identity = 129/228 (56.58%), Postives = 156/228 (68.42%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGR---VNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTR-RGAQA--QLANLSVEDRGA 934 GK+TLL LL+G+LEPT GEV+ HRHL IGRYDQHF ELLP K+P +FL SEY +PEQ+ARK LG FGLDG RHLI I LSGGQKARVVFASL++ PHIL LDEPTNHLDMESV AL+ G++ ++GGVVL+SHDARLI+ ELWVCEG + +G+ HYR++L+RD+ R E A R+ +H R RG A E+RGA Sbjct: 70 GKTTLLKLLTGQLEPTQGEVSHHRHLVIGRYDQHFEELLPFTKTPVEFLCSEYGLPEQEARKFLGMFGLDGTRHLIRIEALSGGQKARVVFASLALQAPHILCLDEPTNHLDMESVQALVDGLRAFQGGVVLISHDARLISELEMELWVCEGSDSERGLRTEPRGYNHYRQTLVRDMERRAVRAERIAEERAEQRRQARATRLARHARVRGVPVPGNAARDGAENRGA 297
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A836CCA4_9STRA (ABC transporter domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA4_9STRA) HSP 1 Score: 214 bits (546), Expect = 3.250e-57 Identity = 110/180 (61.11%), Postives = 128/180 (71.11%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFL-RSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEG-------GGRVNVHRQGFEHYRRSLLR 784 GK+TL+N+++G LEPT GEV R LRIG Y QH LP G S CD L R+ + Q AR LG FGL GA HL +G LSGGQ+ARVV ASLS+++PH LLLDEPTNHLD+ESV ALI GI Y+GGVVLVSHDARLI +TGC LWVCEG G + VH +GF HYRR+ LR Sbjct: 646 GKTTLMNMMAGFLEPTEGEVVRDPRLRIGFYGQHLEAQLPPGLSACDHLQRAHAGISAQAARAALGSFGLAGALHLARMGTLSGGQRARVVLASLSLARPHALLLDEPTNHLDLESVAALIDGINAYRGGVVLVSHDARLIRATGCALWVCEGRAAAAAGGSGLRVHAEGFAHYRRAQLR 825
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A812VCJ4_9DINO (ABCF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VCJ4_9DINO) HSP 1 Score: 207 bits (527), Expect = 5.800e-55 Identity = 99/183 (54.10%), Postives = 132/183 (72.13%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEA 817 GKSTLLNL+ G LEPT GE+ R+R LRIG+Y+QHF ++LP ++P +L+ +D Q++R +LG+FGL+ H I + +LSGGQKARVVFASLS HIL +DEPTNHLD+ES+DAL I ++GGV+LVSHDARLI +T C LWV G V ++ + YR SLL+DI E ++E+ Sbjct: 603 GKSTLLNLIMGDLEPTEGEIHRNRFLRIGKYNQHFVDVLPMDETPVQYLQRMHDTKYQESRMMLGRFGLESHAHEIKVSDLSGGQKARVVFASLSKQDSHILFMDEPTNHLDIESIDALADAIGAFQGGVILVSHDARLIEATDCRLWVISGDLGVTLYEGDVDDYRESLLKDIHEEEEKLES 785
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7S1CLD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLD1_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.480e-53 Identity = 94/154 (61.04%), Postives = 119/154 (77.27%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRS-----EYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWV 715 GKSTLLNLL +L P +GE+ R+R LRIGRY+QHF ++LP KSP D+LRS E + Q AR++LG+FGL+G H+I +LSGGQKARVVFAS+++ +PHI+ DEPTNHLDMES++ALI GI E++GGVVLV+HDARLI C LWV Sbjct: 3 GKSTLLNLLMDELTPATGEIIRNRFLRIGRYNQHFVDVLPMDKSPVDYLRSLVKTGEKTMTVQDARQLLGRFGLEGHAHMIKARDLSGGQKARVVFASMNVLKPHIMFFDEPTNHLDMESIEALIDGIAEFEGGVVLVTHDARLITRLECVLWV 156
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A6T7IIE1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7IIE1_9STRA) HSP 1 Score: 194 bits (492), Expect = 5.980e-53 Identity = 95/175 (54.29%), Postives = 128/175 (73.14%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEY-DVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDI 790 GKSTLL LL+G++ P +GE+ R+ LR+G Y+QHF + LP GK+P + LRS + D+ Q AR LG++GL+G H + + +LSGGQKARVVF LS+ +PHILLLDEPTN+LD E++DALI I E+ GG+V+V+HD RLI+S C LWV E G V + +GF+ Y+ LLR I Sbjct: 208 GKSTLLKLLTGEINPVTGELRRNPRLRMGIYNQHFVDRLPMGKTPVEHLRSRFEDLDYQSARNRLGKYGLEGHAHEVTMRDLSGGQKARVVFVELSLQRPHILLLDEPTNNLDTETIDALIDAINEFNGGIVVVTHDQRLISSCNCNLWVVEKEG-VTIWSEGFDDYKDHLLRQI 381
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A0D2WQE0_CAPO3 (ATP-binding cassette sub-family F member 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQE0_CAPO3) HSP 1 Score: 202 bits (514), Expect = 1.610e-52 Identity = 98/178 (55.06%), Postives = 128/178 (71.91%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAE 802 GKSTLLNL+ G+L PT GEV R+R LRIGRY+QHF ++LP SP ++L + ++ +Q R LG+FGL H IPI +LSGGQKARVVFA+L +PHIL DEPTNHLD+ES+DAL++ I+++KGGVV+VSHDARLI T C+LWVC+ + F+ YR +L + AE Sbjct: 1127 GKSTLLNLIIGELNPTEGEVRRNRKLRIGRYNQHFVDVLPMDISPTEYLMNTFNKVNEQCRAQLGRFGLVSHAHTIPIRDLSGGQKARVVFAALVFQEPHILFFDEPTNHLDIESIDALVEAIEQFKGGVVVVSHDARLITETECQLWVCDERDCIKFDGD-FDDYRDLILAQLEEAE 1303
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7R9ZNG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNG6_9STRA) HSP 1 Score: 186 bits (472), Expect = 2.130e-52 Identity = 90/175 (51.43%), Postives = 125/175 (71.43%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEY-DVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDI 790 GKSTLL LL+G+++ T GEV R+ LR+G Y+QHF + LP K+P D LRS + D+ Q R LG++GL+G H + + +LSGGQKARVVF LS+ +PHILLLDEPTN+LD+E++DAL++ + E+ GG+V+V+HD RLI C LWV E G V GF+ Y+ S+L+ + Sbjct: 11 GKSTLLKLLTGEIQATKGEVKRNPRLRMGIYNQHFVDRLPMNKTPVDHLRSRFEDLDYQTCRNRLGKYGLEGHAHEVVMRDLSGGQKARVVFVELSLQEPHILLLDEPTNNLDIETIDALVEAVNEFNGGIVVVTHDQRLIEECDCTLWVVEKQG-VTEWTAGFDDYKESILKQL 184
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A812MXN1_SYMPI (ABCF4 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MXN1_SYMPI) HSP 1 Score: 201 bits (511), Expect = 2.760e-52 Identity = 100/183 (54.64%), Postives = 128/183 (69.95%), Query Frame = 2 Query: 269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDV-PEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVE 814 GKSTLLNL+ LEP SG+VT + +RI +Y QHF ELLP K+ ++L E+++ P ++AR VLGQFGL G+ H IG LSGGQKARV FA+L + +PHI++LDEPTNHLD+ESV+AL I + GG+VLVSHDARLI CELWVCE GG + F+ YR +L + +A VE Sbjct: 785 GKSTLLNLMMQHLEPCSGDVTVSKGIRIRQYHQHFEELLPLDKTGVEYLSDEFNLGPPEKARAVLGQFGLPGSSHFTKIGNLSGGQKARVAFAALMLMEPHIIILDEPTNHLDIESVEALTTAISNFNGGLVLVSHDARLITEVDCELWVCEDGGCYRFEKD-FDGYRDKVLHQLEERQAEVE 966 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13044.2410.1 >prot_L-elsbetiae_contig13044.2410.1 ID=prot_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp MSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCback to top mRNA from alignment at L-elsbetiae_contig13044:901..3804- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13044.2410.1 ID=mRNA_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2904bp|location=Sequence derived from alignment at L-elsbetiae_contig13044:901..3804- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13044:901..3804- >mRNA_L-elsbetiae_contig13044.2410.1 ID=mRNA_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig13044:901..3804- (Laminarionema elsbetiae ELsaHSoW15)back to top |