mRNA_L-elsbetiae_contig13044.2410.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13044.2410.1
Unique NamemRNA_L-elsbetiae_contig13044.2410.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A6H5JF33_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF33_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 1.090e-130
Identity = 217/249 (87.15%), Postives = 224/249 (89.96%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTRRGAQAQLANLSVEDRGANTRVEEDARKV-VRKEAVASVFGKKKR 1012
            GKSTLLNLLSGKLEP+SGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPI ELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALI+GIQEYKGGVVLVSHDARLIA+T CELWVCEGGGRVNVHR GFEHYRRSLLRDIANAEARVEAAXXXXXXXXX   ADR+GKHTRRGAQAQ + L +            A    VRK+AVASVFGKKKR
Sbjct:  392 GKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVNVHRHGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXKERADRLGKHTRRGAQAQFSKLGLXXXXXXXXXXXXACSTEVRKKAVASVFGKKKR 640          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: D8LEI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI0_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 4.920e-130
Identity = 223/249 (89.56%), Postives = 232/249 (93.17%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTRRGAQAQLANLSVEDRGANTRVEEDARKV-VRKEAVASVFGKKKR 1012
            GKSTLLNLLSGKLEP+SGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPI ELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALI+GIQEYKGGVVLVSHDARLIA+T CELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEA XXXXXXXXXXXXADR+GKHTRRGAQAQ + L +  +G     E +AR   VRK+AVASVFGKKKR
Sbjct:  684 GKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAXXXXXXXXXXXXXADRLGKHTRRGAQAQFSKLGL-GKGXTEEXEVEARSTEVRKKAVASVFGKKKR 931          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7S2RHT7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHT7_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.970e-74
Identity = 129/228 (56.58%), Postives = 156/228 (68.42%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGR---VNVHRQGFEHYRRSLLRDIANAEARVEAAXXXXXXXXXXXXADRVGKHTR-RGAQA--QLANLSVEDRGA 934
            GK+TLL LL+G+LEPT GEV+ HRHL IGRYDQHF ELLP  K+P +FL SEY +PEQ+ARK LG FGLDG RHLI I  LSGGQKARVVFASL++  PHIL LDEPTNHLDMESV AL+ G++ ++GGVVL+SHDARLI+    ELWVCEG      +    +G+ HYR++L+RD+     R E              A R+ +H R RG       A    E+RGA
Sbjct:   70 GKTTLLKLLTGQLEPTQGEVSHHRHLVIGRYDQHFEELLPFTKTPVEFLCSEYGLPEQEARKFLGMFGLDGTRHLIRIEALSGGQKARVVFASLALQAPHILCLDEPTNHLDMESVQALVDGLRAFQGGVVLISHDARLISELEMELWVCEGSDSERGLRTEPRGYNHYRQTLVRDMERRAVRAERIAEERAEQRRQARATRLARHARVRGVPVPGNAARDGAENRGA 297          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A836CCA4_9STRA (ABC transporter domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA4_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.250e-57
Identity = 110/180 (61.11%), Postives = 128/180 (71.11%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFL-RSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEG-------GGRVNVHRQGFEHYRRSLLR 784
            GK+TL+N+++G LEPT GEV R   LRIG Y QH    LP G S CD L R+   +  Q AR  LG FGL GA HL  +G LSGGQ+ARVV ASLS+++PH LLLDEPTNHLD+ESV ALI GI  Y+GGVVLVSHDARLI +TGC LWVCEG       G  + VH +GF HYRR+ LR
Sbjct:  646 GKTTLMNMMAGFLEPTEGEVVRDPRLRIGFYGQHLEAQLPPGLSACDHLQRAHAGISAQAARAALGSFGLAGALHLARMGTLSGGQRARVVLASLSLARPHALLLDEPTNHLDLESVAALIDGINAYRGGVVLVSHDARLIRATGCALWVCEGRAAAAAGGSGLRVHAEGFAHYRRAQLR 825          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A812VCJ4_9DINO (ABCF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VCJ4_9DINO)

HSP 1 Score: 207 bits (527), Expect = 5.800e-55
Identity = 99/183 (54.10%), Postives = 132/183 (72.13%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEA 817
            GKSTLLNL+ G LEPT GE+ R+R LRIG+Y+QHF ++LP  ++P  +L+  +D   Q++R +LG+FGL+   H I + +LSGGQKARVVFASLS    HIL +DEPTNHLD+ES+DAL   I  ++GGV+LVSHDARLI +T C LWV  G   V ++    + YR SLL+DI   E ++E+
Sbjct:  603 GKSTLLNLIMGDLEPTEGEIHRNRFLRIGKYNQHFVDVLPMDETPVQYLQRMHDTKYQESRMMLGRFGLESHAHEIKVSDLSGGQKARVVFASLSKQDSHILFMDEPTNHLDIESIDALADAIGAFQGGVILVSHDARLIEATDCRLWVISGDLGVTLYEGDVDDYRESLLKDIHEEEEKLES 785          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7S1CLD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLD1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.480e-53
Identity = 94/154 (61.04%), Postives = 119/154 (77.27%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRS-----EYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWV 715
            GKSTLLNLL  +L P +GE+ R+R LRIGRY+QHF ++LP  KSP D+LRS     E  +  Q AR++LG+FGL+G  H+I   +LSGGQKARVVFAS+++ +PHI+  DEPTNHLDMES++ALI GI E++GGVVLV+HDARLI    C LWV
Sbjct:    3 GKSTLLNLLMDELTPATGEIIRNRFLRIGRYNQHFVDVLPMDKSPVDYLRSLVKTGEKTMTVQDARQLLGRFGLEGHAHMIKARDLSGGQKARVVFASMNVLKPHIMFFDEPTNHLDMESIEALIDGIAEFEGGVVLVTHDARLITRLECVLWV 156          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A6T7IIE1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7IIE1_9STRA)

HSP 1 Score: 194 bits (492), Expect = 5.980e-53
Identity = 95/175 (54.29%), Postives = 128/175 (73.14%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEY-DVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDI 790
            GKSTLL LL+G++ P +GE+ R+  LR+G Y+QHF + LP GK+P + LRS + D+  Q AR  LG++GL+G  H + + +LSGGQKARVVF  LS+ +PHILLLDEPTN+LD E++DALI  I E+ GG+V+V+HD RLI+S  C LWV E  G V +  +GF+ Y+  LLR I
Sbjct:  208 GKSTLLKLLTGEINPVTGELRRNPRLRMGIYNQHFVDRLPMGKTPVEHLRSRFEDLDYQSARNRLGKYGLEGHAHEVTMRDLSGGQKARVVFVELSLQRPHILLLDEPTNNLDTETIDALIDAINEFNGGIVVVTHDQRLISSCNCNLWVVEKEG-VTIWSEGFDDYKDHLLRQI 381          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A0D2WQE0_CAPO3 (ATP-binding cassette sub-family F member 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQE0_CAPO3)

HSP 1 Score: 202 bits (514), Expect = 1.610e-52
Identity = 98/178 (55.06%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAE 802
            GKSTLLNL+ G+L PT GEV R+R LRIGRY+QHF ++LP   SP ++L + ++   +Q R  LG+FGL    H IPI +LSGGQKARVVFA+L   +PHIL  DEPTNHLD+ES+DAL++ I+++KGGVV+VSHDARLI  T C+LWVC+    +      F+ YR  +L  +  AE
Sbjct: 1127 GKSTLLNLIIGELNPTEGEVRRNRKLRIGRYNQHFVDVLPMDISPTEYLMNTFNKVNEQCRAQLGRFGLVSHAHTIPIRDLSGGQKARVVFAALVFQEPHILFFDEPTNHLDIESIDALVEAIEQFKGGVVVVSHDARLITETECQLWVCDERDCIKFDGD-FDDYRDLILAQLEEAE 1303          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A7R9ZNG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNG6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.130e-52
Identity = 90/175 (51.43%), Postives = 125/175 (71.43%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEY-DVPEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDI 790
            GKSTLL LL+G+++ T GEV R+  LR+G Y+QHF + LP  K+P D LRS + D+  Q  R  LG++GL+G  H + + +LSGGQKARVVF  LS+ +PHILLLDEPTN+LD+E++DAL++ + E+ GG+V+V+HD RLI    C LWV E  G V     GF+ Y+ S+L+ +
Sbjct:   11 GKSTLLKLLTGEIQATKGEVKRNPRLRMGIYNQHFVDRLPMNKTPVDHLRSRFEDLDYQTCRNRLGKYGLEGHAHEVVMRDLSGGQKARVVFVELSLQEPHILLLDEPTNNLDIETIDALVEAVNEFNGGIVVVTHDQRLIEECDCTLWVVEKQG-VTEWTAGFDDYKESILKQL 184          
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Match: A0A812MXN1_SYMPI (ABCF4 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MXN1_SYMPI)

HSP 1 Score: 201 bits (511), Expect = 2.760e-52
Identity = 100/183 (54.64%), Postives = 128/183 (69.95%), Query Frame = 2
Query:  269 GKSTLLNLLSGKLEPTSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDV-PEQQARKVLGQFGLDGARHLIPIGELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGCELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVE 814
            GKSTLLNL+   LEP SG+VT  + +RI +Y QHF ELLP  K+  ++L  E+++ P ++AR VLGQFGL G+ H   IG LSGGQKARV FA+L + +PHI++LDEPTNHLD+ESV+AL   I  + GG+VLVSHDARLI    CELWVCE GG     +  F+ YR  +L  +   +A VE
Sbjct:  785 GKSTLLNLMMQHLEPCSGDVTVSKGIRIRQYHQHFEELLPLDKTGVEYLSDEFNLGPPEKARAVLGQFGLPGSSHFTKIGNLSGGQKARVAFAALMLMEPHIIILDEPTNHLDIESVEALTTAISNFNGGLVLVSHDARLITEVDCELWVCEDGGCYRFEKD-FDGYRDKVLHQLEERQAEVE 966          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13044.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF33_9PHAE1.090e-13087.15ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LEI0_ECTSI4.920e-13089.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHT7_9STRA3.970e-7456.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CCA4_9STRA3.250e-5761.11ABC transporter domain-containing protein n=1 Tax=... [more]
A0A812VCJ4_9DINO5.800e-5554.10ABCF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1CLD1_9STRA1.480e-5361.04Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6T7IIE1_9STRA5.980e-5354.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0D2WQE0_CAPO31.610e-5255.06ATP-binding cassette sub-family F member 1 n=1 Tax... [more]
A0A7R9ZNG6_9STRA2.130e-5251.43Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A812MXN1_SYMPI2.760e-5254.64ABCF4 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13044contigL-elsbetiae_contig13044:901..3804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue2.1e-55
Seed eggNOG ortholog2880.D8LEI0
KEGG koko:K06184
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation activator activity
EggNOG OGsCOG0488@1,KOG0066@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-21_004610.1
Exons5
Model size1523
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.1805677-UTR-L-elsbetiae_contig13044:900..13001622815487.1805677-UTR-L-elsbetiae_contig13044:900..1300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 901..1300 -
1691682921.8339076-UTR-L-elsbetiae_contig13044:900..13001691682921.8339076-UTR-L-elsbetiae_contig13044:900..1300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 901..1300 -
1622815487.194797-UTR-L-elsbetiae_contig13044:1460..15621622815487.194797-UTR-L-elsbetiae_contig13044:1460..1562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 1461..1562 -
1691682921.8448439-UTR-L-elsbetiae_contig13044:1460..15621691682921.8448439-UTR-L-elsbetiae_contig13044:1460..1562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 1461..1562 -
1622815487.2532163-UTR-L-elsbetiae_contig13044:2812..29111622815487.2532163-UTR-L-elsbetiae_contig13044:2812..2911Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 2813..2911 -
1691682921.8865306-UTR-L-elsbetiae_contig13044:2812..29111691682921.8865306-UTR-L-elsbetiae_contig13044:2812..2911Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 2813..2911 -
1622815487.2682452-UTR-L-elsbetiae_contig13044:3350..38041622815487.2682452-UTR-L-elsbetiae_contig13044:3350..3804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 3351..3804 -
1691682921.8954883-UTR-L-elsbetiae_contig13044:3350..38041691682921.8954883-UTR-L-elsbetiae_contig13044:3350..3804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13044 3351..3804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.2102776-CDS-L-elsbetiae_contig13044:1562..18501622815487.2102776-CDS-L-elsbetiae_contig13044:1562..1850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 1563..1850 -
1691682921.8532221-CDS-L-elsbetiae_contig13044:1562..18501691682921.8532221-CDS-L-elsbetiae_contig13044:1562..1850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 1563..1850 -
1622815487.2214057-CDS-L-elsbetiae_contig13044:2330..24631622815487.2214057-CDS-L-elsbetiae_contig13044:2330..2463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 2331..2463 -
1691682921.862121-CDS-L-elsbetiae_contig13044:2330..24631691682921.862121-CDS-L-elsbetiae_contig13044:2330..2463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 2331..2463 -
1622815487.2388356-CDS-L-elsbetiae_contig13044:2765..28121622815487.2388356-CDS-L-elsbetiae_contig13044:2765..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 2766..2812 -
1691682921.8757985-CDS-L-elsbetiae_contig13044:2765..28121691682921.8757985-CDS-L-elsbetiae_contig13044:2765..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13044 2766..2812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13044.2410.1prot_L-elsbetiae_contig13044.2410.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13044 1563..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13044.2410.1

>prot_L-elsbetiae_contig13044.2410.1 ID=prot_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MSQPHILLLDEPTNHLDMESVDALIKGIQEYKGGVVLVSHDARLIASTGC
ELWVCEGGGRVNVHRQGFEHYRRSLLRDIANAEARVEAAAAARAARRAKE
RADRVGKHTRRGAQAQLANLSVEDRGANTRVEEDARKVVRKEAVASVFGK
KKRKG*
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mRNA from alignment at L-elsbetiae_contig13044:901..3804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13044.2410.1 ID=mRNA_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2904bp|location=Sequence derived from alignment at L-elsbetiae_contig13044:901..3804- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACCTGCGATTCAAGGTGGACACCGACACGAGGGTAGCGATTGTGGG GCCAAACGGAGTTGGTGAGTTTATTTATTCCGGTGCCTCACGGGGTGGGG TGTAAATACGCCATTGCCTCTTGTCGGTGGTTGCAAATACTGCTGTACCA TCTAACGCTAGGCAAAACAACGAACCACCTTTTAGCTCACGGGTTGGCGA GAATCCCACGCACTCGAGTACCTTTCATCCGTAAACCCCCCCCTCCCCGC CTTATGCGATCCCGGTAAGGAAAATCGACGCTACTGAATCTCTTGTCGGG GAAGCTGGAGCCCACGTCCGGGGAGGTGACCCGTCACCGGCACCTGAGGA TAGGGCGTTACGACCAGCACTTCCACGAGCTGCTGCCCCAGGGCAAGAGC CCGTGCGACTTCTTGAGGTCGGAGTACGACGTGCCCGAGCAGCAGGCTAG GAAGGTGACTTCTTGAGTGTCGTAGTTTTTCGTGTTCCGGAGGCTTCACC GCACGACGCGTGGCTGGCTACCTTTCCGATCTGGTGGAAGTGCCTGTGGG TCCTTTTTACGCCGCCCCAGTATTACTGCGCGCCTTCCTCGTCTCAGGTT GTATGTAGCCACGGTAGTGTAGTGGTTGCTTGTCGAGCAGCCTGGTGCGG ACGTGGGGAGGATATGGGGGTCGAACCTTTCTTAGTTGAAAGAGCACACA AGAACCCGCTTGACGTAGTTGGTCGTAGCTTTCTCTCTTCGTGGGGGGGG GGGGGGGGGGGGCAGGTGTTCAGGAGTTTTTGGTGCCTTTTGAATTCTGC GTTTGGCGATAGGTGCTTATCTTTTTATAAGCTGAAAACTGCAAGACAAC CGCCGTCCTGTGATGGTTCTTTGCTCTCGTTGATTTCGTGCAGGTGCTGG GACAGTTCGGGCTTGACGGCGCGAGGCACCTGATTCCCATCGGGGAGCTA TCGGGAGGGCAGAAGGCGCGGGTGGTGTTTGCCTCGCTGTCCATGTCTCA GCCGCACATCCTGCTCCTCGACGAGCCCACTAACCATCTGTGAGTTGCGT TGCCTTGATCTATCACGCGCCAAGACTATACCGCACTACTGTTCAGTGGA TACCGCACTACTGTTCAGTGGTGAGACCTGTTGGACTTGGAAAATCTCGG CACACCGAGACACACATACCATTGATCCCAAGAGACCATGGGCTGGTGCG TATTTCTCCGTGTGGGGGGGCACCGGCGGATGCGATTGGTCAGAAAAGGC ACCAAACGTAAATATTCGGGCACCGCGCTACCCACCTCCTTGCCGGACCG ACTCACCCCTTCACCCTCATCCCGCGGTGAATGTTTCGCAGTGACATGGA GAGCGTGGACGCCCTGATCAAGGGCATCCAAGAGTACAAGGGCGGAGTTG TGTTGGTCTCGCACGACGCGAGACTCATTGCCTCGACCGGCTGCGAGCTG TGGGTCTGCGAAGGCGGTGGGCGGGTAAGAATCCAATCTATACTGACTAC TGCTGTTGTGCCGCAGCCCCATTGTTTTGCCCTCCTTTGGAGAGCCTGCG GTTTCGCATACACACGAGGGTACACGGAAGTGCGGGTAAAGGGAACAAGC AGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTATTATTGTTG TTGTCTTCACATTCAAAACCGTTCCGGTCTCTCTACCCAGCTACCCAGTA CCTCCATCCGTCCGTACTAACCCAACACCTGACGCGGTCGATTTCCGTGG CCACAGGCTAACTTACCCTGGAAAGGGTTATATACTGAAAAGCAAAAATG GGTCCGAAAAGAGTCAGCAAAGCAAAAAAACAAAAGATCAGGCACACAGA CGGCCGTCGGTAACCCACGGCCCGTCCTACATACCGCATGTAGTCTTCTA ACTTGTGCTGTTGCTCTCCTCTGCTGTCCAACTACTGTGCTCGGTCTTTT GCAGGTCAACGTCCACCGGCAGGGCTTCGAGCACTACCGCAGGTCGCTCC TGAGAGACATCGCAAACGCGGAAGCCAGGGTCGAAGCGGCAGCCGCTGCG AGGGCGGCGCGTCGCGCCAAGGAACGCGCGGACCGAGTCGGCAAGCACAC GCGTCGGGGGGCCCAGGCACAGCTCGCCAACCTCAGCGTGGAGGACCGCG GGGCAAATACGAGGGTGGAGGAGGATGCCCGCAAGGTGGTTAGGAAGGAG GCCGTGGCTTCTGTGTTCGGGAAAAAGAAGAGAAAAGGTTGAGAACTTGG TGTGAGCTTTTTAGGTGAAAGGGGTTCGAATTCGCCGTGAACGCACCGTA GTCGAGAACGGAATGCTTCGTTTTTTTTTTTTTCAAGTTGGAGTGTTTTT TTGCTGATTTAAAGGATGACCATGGTTGTATTCGGCGGATAGTTCGTGCT GGGGGGGGCGGGGGGGGGGGTGGGGGGGGGGGGGGTGTGTGTGCGGCGGG GAAGAAAGGAAGAAGAGAACGGAATGCTTCGTTTTTTTTTTTTTCAAGTT GGAGTGTTTTTTTGCTGATTTAAAGGATGACCATGGTTGTATTCGGCGAA TAGTTCGAGCTGGGGTTGGCTGAGCTTTATTTGTTGTTTTGAATCTGGTG GGAGATTTATTTTCCTTACCCCTCAACTGAGCGAGAAGCTACCGTGTCCA TGTTGCGCTCAGTGCCTTCCCACCTTGCACTCGGGGCTTCATATACCAAC CTCGTCGGCATGTTTATCGCACCAGATGCGAGGTCGTGAGTATCAAGTCG GCACATATGGGCTCGCTTCCGTCCATGCGCTTCAGCGTAAAATCACTTAG TTAAATCATGCGGGAGGGATACTAAGCAGTTTTTGGTTCCTGAGCATAGC GATTGTTTTTTCACGCGTGGGTGTGATGTATGTACAGTATGTAGTGATGA GCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13044:901..3804-

>mRNA_L-elsbetiae_contig13044.2410.1 ID=mRNA_L-elsbetiae_contig13044.2410.1|Name=mRNA_L-elsbetiae_contig13044.2410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig13044:901..3804- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCAGCCGCACATCCTGCTCCTCGACGAGCCCACTAACCATCTATG
TCTCAGCCGCACATCCTGCTCCTCGACGAGCCCACTAACCATCTTGACAT
GGAGAGCGTGGACGCCCTGATCAAGGGCATCCAAGAGTACAAGGGCGGAG
TTGTGTTGGTCTCGCACGACGCGAGACTCATTGCCTCGACCGGCTGCGAG
CTGTGGGTCTGCGAAGGCGGTGGGCGGTGACATGGAGAGCGTGGACGCCC
TGATCAAGGGCATCCAAGAGTACAAGGGCGGAGTTGTGTTGGTCTCGCAC
GACGCGAGACTCATTGCCTCGACCGGCTGCGAGCTGTGGGTCTGCGAAGG
CGGTGGGCGGGTCAACGTCCACCGGCAGGGCTTCGAGCACTACCGCAGGT
CGCTCCTGAGAGACATCGCAAACGCGGAAGCCAGGGTCGAAGCGGCAGCC
GCTGCGAGGGCGGCGCGTCGCGCCAAGGAACGCGCGGACCGAGTCGGCAA
GCACACGCGTCGGGGGGCCCAGGCACAGCTCGCCAACCTCAGCGTGGAGG
ACCGCGGGGCAAATACGAGGGTGGAGGAGGATGCCCGCAAGGTGGTTAGG
AAGGAGGCCGTGGCTTCTGTGTTCGGGAAAAAGAAGAGAAAAGGTTGAGT
CAACGTCCACCGGCAGGGCTTCGAGCACTACCGCAGGTCGCTCCTGAGAG
ACATCGCAAACGCGGAAGCCAGGGTCGAAGCGGCAGCCGCTGCGAGGGCG
GCGCGTCGCGCCAAGGAACGCGCGGACCGAGTCGGCAAGCACACGCGTCG
GGGGGCCCAGGCACAGCTCGCCAACCTCAGCGTGGAGGACCGCGGGGCAA
ATACGAGGGTGGAGGAGGATGCCCGCAAGGTGGTTAGGAAGGAGGCCGTG
GCTTCTGTGTTCGGGAAAAAGAAGAGAAAAGGTTGA
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