mRNA_L-elsbetiae_contig13000.2384.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13000.2384.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 370 bits (949), Expect = 1.190e-117 Identity = 277/488 (56.76%), Postives = 311/488 (63.73%), Query Frame = 1 Query: 1 RETEELLESGEAYYLVYGREGHQLLRDNRWDLQLWDFALKLVESRSTSKESYLCGSSMAARSQRMPGEGRRAVVYNSPSFHITGVAMFSCVLTSLGFDVTAVIKDPGAGFQDLLPCPNTVVTLVGNYLPGVPGEILNEATAAALGLPAGMTADQQERRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEPGGYRGRGPGAEDRGVATRQPRIREEKEEEEEKAGEEWGVGVRGITGGRRGRSELNDAGG-RVPGGEEGEGEVRASGGLSLSRSAAGVEGXXXXXXXXXXXXXXXXXXXXXXXXXGGRR---PFDLSVLCTMVSDVNHLMKPRYPVDPRLVDALLWDVDVSIWNLHSVEGAFRSDHRVPPAAEDYLRGVPSMAERGGGGRTPPLSFLTLYGEHVEQ 1452 RETE+LLESGEAYYLV+G+EG +LLRDNRWDLQLWDFA KLVESRST+ E YLCGSS +AR QRMPG+GRRAVVYNSPSFH+TGVAMFSCVL SLGFDVTAV+K+PGAGF+ LLPCP+ VV L +YL +PGEIL+E AAAL LP +TA+Q+E R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RG G E+ R R+R KE++E AGE+ V G TG RR R+ D GG RV G G+ R G + G+ G GGR PFDLSVLCT V+DVNHL+K YPVDPRL DALLWDVDVSIWN+HSVEGAFRSDHR+PPA +D+ RGVPS AERGGGGR PPL+FLTLYGEHVEQ Sbjct: 205 RETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPGEILDEEAAAALSLPESLTAEQEEER-----------LRQQALHLERLRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGFSLEGGSRGAALGGDGDDGFGALDVGVQEGSDREGSRAAXXXXXXXNSRGLGHEE----LRLRRLRR-KEDDERSAGED----VLG-TGRRRERTGSEDGGGPRVLDGRGCAGQ-RDGGDADKRHGSRGLGGAELSGRVSAAAGGDGRQVEGGEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGRPPPLTFLTLYGEHVEQ 670
BLAST of mRNA_L-elsbetiae_contig13000.2384.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 353 bits (905), Expect = 2.050e-110 Identity = 255/483 (52.80%), Postives = 284/483 (58.80%), Query Frame = 1 Query: 1 RETEELLESGEAYYLVYGREGHQLLRDNRWDLQLWDFALKLVESRSTSKESYLCGSSMAARSQRMPGEGRRAVVYNSPSFHITGVAMFSCVLTSLGFDVTAVIKDPGAGFQDLLPCPNTVVTLVGNYLPGVPGEILNEATAAALGLPAGMTADQQERRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEPGGYRGRGPGAEDRGVATRQPRIREEKEEEEEKAGEEWGVGVRGITGGRRGRSELNDAGGRVPGGEEGEGEVRASGGLSLSRSAAGVEGXXXXXXXXXXXXXXXXXXXXXXXXXGGRR---PFDLSVLCTMVSDVNHLMKPRYPVDPRLVDALLWDVDVSIWNLHSVEGAFRSDHRVPPAAEDYLRGVPSMAERGGGGRTPPLSFLTLYGE 1440 RETE+LLESGEA+YLV+G+EG +LLRDNRWDLQLWDFA KLVESRST+ E YLCGSS +AR QRMPG+GRRAVVYNSPSFHITGVAMFSCVL SLGFDVTAV+K+PGAGF+ LLPCP+ VV L +YL +PGEIL+E AAL LP +TA+Q+E R G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G R G+ED G PR V RG G R G G R GG E G V + G R G EG GGR PFDLSVLCT V+DVNHL+K YPVDPRL DALLWDVDVSIWN+HSVEGAFRSDHR+PPA +D+ RGVPS +ERGGGGRTPPL+FLTLYGE Sbjct: 201 RETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPGEILDEEAVAALSLPESLTAEQEEER----------------LRQQQVGGEQGGYPTGRGGQKRRGGEAGRRRGPALGGDGDGDLGALDVGVEEGSDRQGSRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVQGTGRRRELTGSEDGGG----PRA----------------VDGRGGAGQREGGDAEERHGSRGLGGAELSGRVSVAAGGD-GRQVEGGEGRG-----------------------GGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSSERGGGGRTPPLTFLTLYGE 623 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13000.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13000.2384.1 >prot_L-elsbetiae_contig13000.2384.1 ID=prot_L-elsbetiae_contig13000.2384.1|Name=mRNA_L-elsbetiae_contig13000.2384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=485bp RETEELLESGEAYYLVYGREGHQLLRDNRWDLQLWDFALKLVESRSTSKEback to top mRNA from alignment at L-elsbetiae_contig13000:134..5201- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13000.2384.1 ID=mRNA_L-elsbetiae_contig13000.2384.1|Name=mRNA_L-elsbetiae_contig13000.2384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5068bp|location=Sequence derived from alignment at L-elsbetiae_contig13000:134..5201- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13000:134..5201- >mRNA_L-elsbetiae_contig13000.2384.1 ID=mRNA_L-elsbetiae_contig13000.2384.1|Name=mRNA_L-elsbetiae_contig13000.2384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2910bp|location=Sequence derived from alignment at L-elsbetiae_contig13000:134..5201- (Laminarionema elsbetiae ELsaHSoW15)back to top |