prot_L-elsbetiae_contig12950.2337.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12950.2337.1
Unique Nameprot_L-elsbetiae_contig12950.2337.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length124
Homology
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BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.540e-52
Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 0 
Query:    1 IGTPQSCQQSLLHYHMAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGRRPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQMYQAGAELRDLHSTSLAANMLMRGA 124
            IGTPQSCQ+SL HY+MAAREVIADLH  GRGG+ R++DRTRLS R VAGRRPA+D+D+ELVD W A AE GDVGSIR MG+LY HG RG++QD EK+Y+MY+ GAEL D  S S AAN+ MRGA
Sbjct:  163 IGTPQSCQKSLAHYYMAAREVIADLHAEGRGGVSRNVDRTRLSVRFVAGRRPASDSDQELVDIWRAGAEIGDVGSIRVMGLLYQHGARGLDQDLEKSYEMYEKGAELSDAASMSFAANLQMRGA 286
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BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.840e-43
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 0 
Query:   16 MAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGRRPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQMYQAGAELRDLHSTSLAANMLMRGA 124
            MAAREVIADLH  G GG+ R++DRTRLS R VAGRRPA+D+D+ELVD W A AE GDVGSIR MG+LY HG+RG++QD EK+Y+MY+ GAEL D  S S AAN+ MRGA
Sbjct:    1 MAAREVIADLHAEGCGGVSRNVDRTRLSVRFVAGRRPASDSDQELVDMWRAGAEVGDVGSIRVMGLLYQHGVRGLDQDLEKSYEMYEIGAELSDAASMSFAANLQMRGA 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP59_9PHAE1.540e-5270.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTA1_ECTSI2.840e-4368.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 73..109
e-value: 7.7E-5
score: 32.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..124
e-value: 4.8E-11
score: 43.7
NoneNo IPR availablePANTHERPTHR11102:SF147SEL1L ERAD E3 LIGASE ADAPTOR SUBUNITcoord: 1..122
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 1..122
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 61..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12950contigL-elsbetiae_contig12950:3559..4671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12950.2337.1mRNA_L-elsbetiae_contig12950.2337.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12950 3559..4671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12950.2337.1 ID=prot_L-elsbetiae_contig12950.2337.1|Name=mRNA_L-elsbetiae_contig12950.2337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
IGTPQSCQQSLLHYHMAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGR
RPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQM
YQAGAELRDLHSTSLAANMLMRGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf