mRNA_L-elsbetiae_contig12950.2337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12950.2337.1
Unique NamemRNA_L-elsbetiae_contig12950.2337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.540e-52
Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:    1 IGTPQSCQQSLLHYHMAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGRRPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQMYQAGAELRDLHSTSLAANMLMRGA 372
            IGTPQSCQ+SL HY+MAAREVIADLH  GRGG+ R++DRTRLS R VAGRRPA+D+D+ELVD W A AE GDVGSIR MG+LY HG RG++QD EK+Y+MY+ GAEL D  S S AAN+ MRGA
Sbjct:  163 IGTPQSCQKSLAHYYMAAREVIADLHAEGRGGVSRNVDRTRLSVRFVAGRRPASDSDQELVDIWRAGAEIGDVGSIRVMGLLYQHGARGLDQDLEKSYEMYEKGAELSDAASMSFAANLQMRGA 286
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BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.840e-43
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:   46 MAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGRRPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQMYQAGAELRDLHSTSLAANMLMRGA 372
            MAAREVIADLH  G GG+ R++DRTRLS R VAGRRPA+D+D+ELVD W A AE GDVGSIR MG+LY HG+RG++QD EK+Y+MY+ GAEL D  S S AAN+ MRGA
Sbjct:    1 MAAREVIADLHAEGCGGVSRNVDRTRLSVRFVAGRRPASDSDQELVDMWRAGAEVGDVGSIRVMGLLYQHGVRGLDQDLEKSYEMYEIGAELSDAASMSFAANLQMRGA 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12950.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP59_9PHAE1.540e-5270.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTA1_ECTSI2.840e-4368.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12950contigL-elsbetiae_contig12950:3559..4671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue6.7e-36
Seed eggNOG ortholog2880.D8LTA1
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_005790.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.8379185-CDS-L-elsbetiae_contig12950:3558..38211622815476.8379185-CDS-L-elsbetiae_contig12950:3558..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12950 3559..3821 +
1691682916.7882676-CDS-L-elsbetiae_contig12950:3558..38211691682916.7882676-CDS-L-elsbetiae_contig12950:3558..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12950 3559..3821 +
1622815476.8523204-CDS-L-elsbetiae_contig12950:4562..46711622815476.8523204-CDS-L-elsbetiae_contig12950:4562..4671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12950 4563..4671 +
1691682916.8048337-CDS-L-elsbetiae_contig12950:4562..46711691682916.8048337-CDS-L-elsbetiae_contig12950:4562..4671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12950 4563..4671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12950.2337.1prot_L-elsbetiae_contig12950.2337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12950 3559..4671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12950.2337.1

>prot_L-elsbetiae_contig12950.2337.1 ID=prot_L-elsbetiae_contig12950.2337.1|Name=mRNA_L-elsbetiae_contig12950.2337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
IGTPQSCQQSLLHYHMAAREVIADLHTGGRGGMPRSIDRTRLSDRLVAGR
RPAADTDRELVDFWEAAAETGDVGSIRTMGVLYHHGIRGVEQDFEKAYQM
YQAGAELRDLHSTSLAANMLMRGA
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mRNA from alignment at L-elsbetiae_contig12950:3559..4671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12950.2337.1 ID=mRNA_L-elsbetiae_contig12950.2337.1|Name=mRNA_L-elsbetiae_contig12950.2337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1113bp|location=Sequence derived from alignment at L-elsbetiae_contig12950:3559..4671+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCACCCCGCAGAGCTGCCAGCAGTCTCTGCTGCACTACCACATGGC
GGCGAGGGAGGTGATCGCCGACCTGCACACGGGGGGCCGCGGCGGCATGC
CGAGGTCGATCGATCGCACGAGGCTGTCGGACCGCCTCGTCGCCGGCAGG
CGGCCGGCCGCGGACACGGACCGCGAGCTGGTTGACTTCTGGGAGGCGGC
GGCGGAGACCGGCGACGTGGGCTCGATCCGAACCATGGGGGTGCTGTACC
ACCACGGTATCAGGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
TCTGGTGATTATCTAGCATCGACCGCACTAGATAAGCGGTCGACCAATGA
AAATATGTCAGCCTTTGTGTGTGTGTGTGTGTGCGCGCGCGCTCGCGCGC
CGCGCTCACGTGCCCCACGTGAAAGTGGCACAAACTGCTTGGGTCTGGGG
GCTGGGGGGGGGGGGGGGCACCATGTGAGTTCTCTTTTTTCAGCATCTGT
CCGTACAAGTGGCGTTGGAGGCGTGTTTTGTGAAGTTCCTTTCTCGGACA
AAACGCAGAGAAGGATAATTCTGGTAGTGGATGCACTGGGCAGGAGTAGG
GCAGGGGAGGGGGCGCGAGGTGGAAAGTCTTTCACAGGATCAATATAGGC
CGCGCCTTACGCTGTGATTATTTGAGATAATTATATTTGCTTTTTCAGTG
GGCAGATTCTTACACTGAAAACATATTCGGGATCGAGCGACCTTCTTAGG
GGTTATGCACTGTGCTGTTTTTTTTTTTTTTTGCGCTAGTTGCTGGTCGG
CCGGTCCAGGCCGTGTTGACTGGCATGACCCCCGAGCGCGTTCGAGTTGG
CCTCCCGCAGCAACAGCAGTAGTAACACATTTTACGTTTATGTGTATGTG
TGTATTTAGGTAGCCACACACCGGAATCCATCTGCGTCGCTTGTTTTCTC
CTTTCTTTCATCTATTTAAAAAAAAACATTTATTTGTGCGCTTTTTTGTT
TCAGGGGTGTCGAGCAGGACTTTGAGAAGGCGTACCAGATGTATCAGGCG
GGGGCGGAGCTGCGAGACCTGCACTCGACGTCCCTCGCGGCGAACATGCT
GATGAGAGGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12950:3559..4671+

>mRNA_L-elsbetiae_contig12950.2337.1 ID=mRNA_L-elsbetiae_contig12950.2337.1|Name=mRNA_L-elsbetiae_contig12950.2337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig12950:3559..4671+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCACCCCGCAGAGCTGCCAGCAGTCTCTGCTGCACTACCACATGGC
GGCGAGGGAGGTGATCGCCGACCTGCACACGGGGGGCCGCGGCGGCATGC
CGAGGTCGATCGATCGCACGAGGCTGTCGGACCGCCTCGTCGCCGGCAGG
CGGCCGGCCGCGGACACGGACCGCGAGCTGGTTGACTTCTGGGAGGCGGC
GGCGGAGACCGGCGACGTGGGCTCGATCCGAACCATGGGGGTGCTGTACC
ACCACGGTATCAGATCGGCACCCCGCAGAGCTGCCAGCAGTCTCTGCTGC
ACTACCACATGGCGGCGAGGGAGGTGATCGCCGACCTGCACACGGGGGGC
CGCGGCGGCATGCCGAGGTCGATCGATCGCACGAGGCTGTCGGACCGCCT
CGTCGCCGGCAGGCGGCCGGCCGCGGACACGGACCGCGAGCTGGTTGACT
TCTGGGAGGCGGCGGCGGAGACCGGCGACGTGGGCTCGATCCGAACCATG
GGGGTGCTGTACCACCACGGTATCAGGGGTGTCGAGCAGGACTTTGAGAA
GGCGTACCAGATGTATCAGGCGGGGGCGGAGCTGCGAGACCTGCACTCGA
CGTCCCTCGCGGCGAACATGCTGATGAGAGGAGCGGGGTGTCGAGCAGGA
CTTTGAGAAGGCGTACCAGATGTATCAGGCGGGGGCGGAGCTGCGAGACC
TGCACTCGACGTCCCTCGCGGCGAACATGCTGATGAGAGGAGCG
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