prot_L-elsbetiae_contig12947.2335.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12947.2335.1
Unique Nameprot_L-elsbetiae_contig12947.2335.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length92
Homology
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BLAST of mRNA_L-elsbetiae_contig12947.2335.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.830e-8
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 0 
Query:    1 MSARASRLRLEEELRRIVEQEETLDGEVKQLLQENASDGAPPVP-------ALSNGH 50
            MSARASRLRLEEELR I EQEE LDGEV QLLQ  A+   P  P       ALSNGH
Sbjct:    1 MSARASRLRLEEELRNISEQEERLDGEVNQLLQAKAAATVPGAPEEVSQAVALSNGH 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12947.2335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE5.830e-866.67Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12947contigL-elsbetiae_contig12947:659..1996 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12947.2335.1mRNA_L-elsbetiae_contig12947.2335.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12947 659..2044 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12947.2335.1 ID=prot_L-elsbetiae_contig12947.2335.1|Name=mRNA_L-elsbetiae_contig12947.2335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MSARASRLRLEEELRRIVEQEETLDGEVKQLLQENASDGAPPVPALSNGH
RRAPIADKLTGRMGGETKRNQDAENGIIAAVSAGETAASSAS
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