mRNA_L-elsbetiae_contig12947.2335.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12947.2335.1
Unique NamemRNA_L-elsbetiae_contig12947.2335.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12947.2335.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-7
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   49 MSARASRLRLEEELRRIVEQEETLDGEVKQLLQENASDGAPPVP-------ALSNGH 198
            MSARASRLRLEEELR I EQEE LDGEV QLLQ  A+   P  P       ALSNGH
Sbjct:    1 MSARASRLRLEEELRNISEQEERLDGEVNQLLQAKAAATVPGAPEEVSQAVALSNGH 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12947.2335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.040e-766.67Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12947contigL-elsbetiae_contig12947:659..2044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size325
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12947.2335.1prot_L-elsbetiae_contig12947.2335.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12947 659..1996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.5634851-CDS-L-elsbetiae_contig12947:658..8351622815476.5634851-CDS-L-elsbetiae_contig12947:658..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12947 659..835 -
1691682916.624318-CDS-L-elsbetiae_contig12947:658..8351691682916.624318-CDS-L-elsbetiae_contig12947:658..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12947 659..835 -
1622815476.5737271-CDS-L-elsbetiae_contig12947:1897..19961622815476.5737271-CDS-L-elsbetiae_contig12947:1897..1996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12947 1898..1996 -
1691682916.6371422-CDS-L-elsbetiae_contig12947:1897..19961691682916.6371422-CDS-L-elsbetiae_contig12947:1897..1996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12947 1898..1996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.5842702-UTR-L-elsbetiae_contig12947:1996..20441622815476.5842702-UTR-L-elsbetiae_contig12947:1996..2044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12947 1997..2044 -
1691682916.6467316-UTR-L-elsbetiae_contig12947:1996..20441691682916.6467316-UTR-L-elsbetiae_contig12947:1996..2044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12947 1997..2044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12947.2335.1

>prot_L-elsbetiae_contig12947.2335.1 ID=prot_L-elsbetiae_contig12947.2335.1|Name=mRNA_L-elsbetiae_contig12947.2335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MSARASRLRLEEELRRIVEQEETLDGEVKQLLQENASDGAPPVPALSNGH
RRAPIADKLTGRMGGETKRNQDAENGIIAAVSAGETAASSAS
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mRNA from alignment at L-elsbetiae_contig12947:659..2044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12947.2335.1 ID=mRNA_L-elsbetiae_contig12947.2335.1|Name=mRNA_L-elsbetiae_contig12947.2335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig12947:659..2044- (Laminarionema elsbetiae ELsaHSoW15)
CACAGCTGAGGCAGTGGCAGCGGGCACGGGCAGGCTGGCTTCCTGAGGAT
GTCGGCGAGGGCATCGAGACTACGTCTTGAGGAGGAGCTCAGGAGAATCG
TGGAGCAGGAGGAAACACTCGATGGAGAAGTGAAGCAGCTTCTGCAGGTG
CGTGCATACGTTTGTTCCACTACAATACTGCCTGCAGTTGTTCTACTGCA
GCCTGGCAGTGCCCGTGCTGCGCCGAATGCCGTATAGGGGATTCCTGGAG
GGTGGGATGAAGCCCACGGGCCCGTGAGACGATTCGTTTTCGTGCTGGCC
CGTCTTGCGCGACGTTTGCATGCCAGTAGAATAAAGCAATAAATTACCAC
TCTCGAGCAAAGAGCTTGATACACCGAACACCAGGCCGTGTGCTGTTGCT
TTCTTATCCCCCCGCAGCCATCGACACACGCAGACAGGCTAGTATGTACG
AGACAGCGTATACCCCGCCAGAAGACTTGAGAGGTACAGTGTCCTCATGT
AGTCCTGCCACGACTTGATGCCGAAGCGCCGGCCCAGGTTTTCTAGATTC
GGTGACATGTGCATATGTTATATTGTATGTAGCACCCATTTTAGTTTACC
CACGGGGAGAGAGACTCCGTCTACCATCTTTTTGTAGACTAAAAAGAGAG
TAGATATGTTGCCGAAACAATCAAAACCTAACCCTAGAACAAGAAAGGAG
ACTCAGCCCATCTCTAGAAAAAGCCGAAATCAAAGAAATCAGCGCTGACT
CCTCTAGTGGTTTGATTTCGGCTTCTAAAGACTGCTTGCTGCCTGTGTCG
AGCGATGAAAAACCGCCCCCCCCCCGCCGCATTTTCTTGAGCCACGCGAC
ACGGGACCCGGGCGTATCGATCGTTTCTCGTTTCTTAATGAGACACATCG
CTGCCGTAGCAAGTGTAACGCCGCATTGCAGCTCTGCAGCACCCGAAATA
CGAAACGGTATGTATGTATGTCGCATGGCAACAAAACAGCTGTGCAATAC
GAAGTAATATTGTAGCAGCTGTGAGGCTGAACAGCGAGCGAGCCCCGGCA
AACCCTCCTCGTCTTTTGTCTCCGGCTTTCGTCTCATTTCTCCACAAAGA
TGCCCACGACGCCCGCAGCAGGCATCTAGGAATTCACATGCCATTTTTAG
CACCGTCCGCTCCGAAAAAACGCAACGCTACGCACGTACATACCCGTCTG
CCTGCCCAGGAAAATGCATCGGACGGGGCCCCACCGGTACCTGCACTCTC
CAACGGCCACCGCCGTGCCCCCATTGCAGACAAGCTTACGGGACGAATGG
GGGGAGAGACCAAGAGAAATCAAGATGCAGAAAACGGAATAATCGCAGCT
GTCTCTGCCGGGGAGACAGCCGCATCGTCGGCATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12947:659..2044-

>mRNA_L-elsbetiae_contig12947.2335.1 ID=mRNA_L-elsbetiae_contig12947.2335.1|Name=mRNA_L-elsbetiae_contig12947.2335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig12947:659..2044- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCGAGGGCATCGAGACTACGTCTTGAGGAGGAGCTCAGGAGAAT
CGTGGAGCAGGAGGAAACACTCGATGGAGAAGTGAAGCAGCTTCTGCAGA
TGTCGGCGAGGGCATCGAGACTACGTCTTGAGGAGGAGCTCAGGAGAATC
GTGGAGCAGGAGGAAACACTCGATGGAGAAGTGAAGCAGCTTCTGCAGGA
AAATGCATCGGACGGGGCCCCACCGGTACCTGCACTCTCCAACGGCCACC
GCCGTGCCCCCATTGCAGACAAGCTTACGGGACGAATGGGGGGAGAGACC
AAGAGAAATCAAGATGCAGAAAACGGAATAATCGCAGCTGTCTCTGCCGG
GGAGACAGCCGCATCGTCGGCATCGGAAAATGCATCGGACGGGGCCCCAC
CGGTACCTGCACTCTCCAACGGCCACCGCCGTGCCCCCATTGCAGACAAG
CTTACGGGACGAATGGGGGGAGAGACCAAGAGAAATCAAGATGCAGAAAA
CGGAATAATCGCAGCTGTCTCTGCCGGGGAGACAGCCGCATCGTCGGCAT
CG
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