prot_L-elsbetiae_contig12888.2295.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12888.2295.1
Unique Nameprot_L-elsbetiae_contig12888.2295.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length193
Homology
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.180e-61
Identity = 136/189 (71.96%), Postives = 146/189 (77.25%), Query Frame = 0
Query:    1 SLRGRQRRESFERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYIKGC 189
            SLRGRQRRESFERRI RPHFHVKPLDDAQLLAWSQYLDFE AQAAG  XXXXXXXXXXXXXXXXXXXX                      SG+       +ERLFERCLVPCASY WLWERYA+WK+SV GLESALEVAERACSPFLRWRPEALFF+AELLER+GR++EAR VY  VLSEV    ++G 
Sbjct:  330 SLRGRQRRESFERRISRPHFHVKPLDDAQLLAWSQYLDFEQAQAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGSGD-------VERLFERCLVPCASYSWLWERYALWKESVRGLESALEVAERACSPFLRWRPEALFFKAELLERVGRKEEARNVYQHVLSEVAPGLVEGA 511          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A7S2V484_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V484_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-16
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:  102 ERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEV 181
            ERL+ERC+VPCA+Y   W RYA WK++  G E + EVA R CS FLR+RP A  F A+LLE  G   EAR VY      V
Sbjct:   43 ERLYERCVVPCANYAEFWMRYANWKETALGAEQSEEVAHRCCSVFLRYRPAAHLFYADLLEAHGHVQEARQVYENASRSV 122          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3W6A2_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W6A2_TAEAS)

HSP 1 Score: 71.6 bits (174), Expect = 3.840e-11
Identity = 47/142 (33.10%), Postives = 65/142 (45.77%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD-SVSGLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++AQL  W++YL FE ++AA                        + A                          K +  L+ERCLV CA Y  LW RYA + + +   ++SA EV  RAC   LR +P
Sbjct:  252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEALLAVSATDDFSAAQITPADVQLAK-------------------------KRVRVLYERCLVACALYEHLWIRYAKYLEFTEQDIQSAREVWRRACGVHLRAKP 368          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A4E0RZU8_FASHE (Pre-mRNA-processing factor 39 n=2 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0RZU8_FASHE)

HSP 1 Score: 70.9 bits (172), Expect = 7.070e-11
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++AQL+ W++YL FE  +AA  XXXXXXXXXXXXXXXXXXXXX +  SS      +R                  ++ L+ERCLV CA Y   W RYA + ++V   +  A ++  RAC+  LR++P
Sbjct:  273 FEEKIRRPYFHVKPLEEAQLINWAEYLSFEEVEAAEMXXXXXXXXXXXXXXXXXXXXXAKVLSSETVLLARRR-----------------VKVLYERCLVACALYEHFWIRYARYTENVERDIREARQIWRRACTVHLRYKP 397          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: U6JJ11_ECHGR (Pre-mRNA-processing factor 39 n=2 Tax=Echinococcus TaxID=6209 RepID=U6JJ11_ECHGR)

HSP 1 Score: 68.9 bits (167), Expect = 3.260e-10
Identity = 45/142 (31.69%), Postives = 63/142 (44.37%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD-SVSGLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++AQL  W++YL FE ++AA                        +                            K +  L+ERCLV CA Y  +W RYA + + +   + SA EV  RAC   LR +P
Sbjct:  252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEALLAVSATDDSQITPADVQLAK----------------------------KRVRVLYERCLVACALYEHMWIRYAKYLEFTEQDIRSAREVWRRACGVHLRAKP 365          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A8E0S795_9TREM (Pre-mRNA-processing factor 39 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S795_9TREM)

HSP 1 Score: 68.2 bits (165), Expect = 5.970e-10
Identity = 46/143 (32.17%), Postives = 66/143 (46.15%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRS-ASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++ QL+ W+ YL FE A+AA                        +  AS      R+R                  ++ L+ERCLV CA Y   W RYA + + V   +  A ++  RAC   LR++P
Sbjct:  261 FEEKIRRPYFHVKPLEEVQLINWADYLSFEEAEAAESESTVREELKAQNPELSETELTAKVLASDVVLLARRR------------------VKVLYERCLVACALYEHFWIRYARYTEYVERDIREARQIWRRACMTHLRYKP 385          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3TKJ8_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TKJ8_RODNA)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-9
Identity = 45/142 (31.69%), Postives = 61/142 (42.96%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++AQL  W++YL FE ++AA                            +                        K +  L+ERCLV CA Y  LW RYA + +     +  A EV  RAC   LR +P
Sbjct:  252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEAVLNVPVTDGHSVTEPQITIAEVQLAK-----------------------KRVRVLYERCLVACALYEHLWIRYAKYLEYTECDISGAREVWRRACCVHLRTKP 370          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A5J4XXZ2_9CHLO (Pre-mRNA-processing factor 39-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXZ2_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 2.320e-8
Identity = 37/89 (41.57%), Postives = 46/89 (51.69%), Query Frame = 0
Query:  101 IERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYIKGC 189
            I RL+ERCLV CASY  LW RY  W++ +S   +A    ERA S   + RPE   F A   ER G  D AR ++  V   +    I G 
Sbjct:  660 IIRLYERCLVACASYPDLWMRYVRWQE-ISSKAAAQVALERATSVHCKRRPEMQLFAAHFHERHGNADTARALFRLVTERLAPTLIPGA 747          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3U9X9_MESCO (Uncharacterized protein n=4 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U9X9_MESCO)

HSP 1 Score: 62.0 bits (149), Expect = 7.810e-8
Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 0
Query:   11 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD------------SVSGLESALEVAERACSPFLRWRP 151
            FE +I+RP+FHVKPL++AQL  W++YL FE ++AA                        ++                           K +  L+ERCLV CA Y  +W RYA + +            +     +A +V  RAC+  LR +P
Sbjct:  277 FEEKIRRPYFHVKPLEEAQLSNWAEYLSFEESEAASAEALLAAPVTEDAPPQVTMEDVQQAK--------------------------KRVRILYERCLVACALYEHMWIRYAKYLEVTCIMIIDVLVYTEQDFCAARDVWRRACTVHLRSKP 403          
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A250WTD7_9CHLO (DNA topoisomerase 6 subunit B n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTD7_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-7
Identity = 36/83 (43.37%), Postives = 42/83 (50.60%), Query Frame = 0
Query:  104 LFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYI 186
            L+ERCLVPCASY   WERY  W +     E A    +RA   F R RPE   F     ER G  + AR  Y  VL E+  R +
Sbjct:  402 LYERCLVPCASYPEYWERYIRWLEKHGLNEEAHAALQRATITFCRSRPEIHLFAMHFDERHGDVEGARKRYKHVLEELAPRLL 484          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR95_ECTSI2.180e-6171.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V484_9STRA1.410e-1653.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0R3W6A2_TAEAS3.840e-1133.10Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
A0A4E0RZU8_FASHE7.070e-1146.48Pre-mRNA-processing factor 39 n=2 Tax=Fasciola hep... [more]
U6JJ11_ECHGR3.260e-1031.69Pre-mRNA-processing factor 39 n=2 Tax=Echinococcus... [more]
A0A8E0S795_9TREM5.970e-1032.17Pre-mRNA-processing factor 39 n=1 Tax=Fasciolopsis... [more]
A0A0R3TKJ8_RODNA1.490e-931.69Uncharacterized protein n=1 Tax=Rodentolepis nana ... [more]
A0A5J4XXZ2_9CHLO2.320e-841.57Pre-mRNA-processing factor 39-like n=1 Tax=Treboux... [more]
A0A0R3U9X9_MESCO7.810e-828.10Uncharacterized protein n=4 Tax=Mesocestoides cort... [more]
A0A250WTD7_9CHLO1.090e-743.37DNA topoisomerase 6 subunit B n=1 Tax=Chlamydomona... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR17204PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDcoord: 7..184
NoneNo IPR availablePANTHERPTHR17204:SF5PRE-MRNA-PROCESSING FACTOR 39coord: 7..184
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 103..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12888contigL-elsbetiae_contig12888:2840..4983 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12888.2295.1mRNA_L-elsbetiae_contig12888.2295.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12888 2840..4983 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12888.2295.1 ID=prot_L-elsbetiae_contig12888.2295.1|Name=mRNA_L-elsbetiae_contig12888.2295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
SLRGRQRRESFERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGAAAA
AAGGGRASASSSSNSSSFDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKG
IERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWR
PEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYIKGCSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf