mRNA_L-elsbetiae_contig12888.2295.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI) HSP 1 Score: 214 bits (545), Expect = 2.180e-61 Identity = 136/189 (71.96%), Postives = 146/189 (77.25%), Query Frame = 1 Query: 1 SLRGRQRRESFERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYIKGC 567 SLRGRQRRESFERRI RPHFHVKPLDDAQLLAWSQYLDFE AQAAG XXXXXXXXXXXXXXXXXXXX SG+ +ERLFERCLVPCASY WLWERYA+WK+SV GLESALEVAERACSPFLRWRPEALFF+AELLER+GR++EAR VY VLSEV ++G Sbjct: 330 SLRGRQRRESFERRISRPHFHVKPLDDAQLLAWSQYLDFEQAQAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGSGD-------VERLFERCLVPCASYSWLWERYALWKESVRGLESALEVAERACSPFLRWRPEALFFKAELLERVGRKEEARNVYQHVLSEVAPGLVEGA 511
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A7S2V484_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V484_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.410e-16 Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 304 ERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEV 543 ERL+ERC+VPCA+Y W RYA WK++ G E + EVA R CS FLR+RP A F A+LLE G EAR VY V Sbjct: 43 ERLYERCVVPCANYAEFWMRYANWKETALGAEQSEEVAHRCCSVFLRYRPAAHLFYADLLEAHGHVQEARQVYENASRSV 122
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3W6A2_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W6A2_TAEAS) HSP 1 Score: 71.6 bits (174), Expect = 3.840e-11 Identity = 47/142 (33.10%), Postives = 65/142 (45.77%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD-SVSGLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++AQL W++YL FE ++AA + A K + L+ERCLV CA Y LW RYA + + + ++SA EV RAC LR +P Sbjct: 252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEALLAVSATDDFSAAQITPADVQLAK-------------------------KRVRVLYERCLVACALYEHLWIRYAKYLEFTEQDIQSAREVWRRACGVHLRAKP 368
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A4E0RZU8_FASHE (Pre-mRNA-processing factor 39 n=2 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0RZU8_FASHE) HSP 1 Score: 70.9 bits (172), Expect = 7.070e-11 Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++AQL+ W++YL FE +AA XXXXXXXXXXXXXXXXXXXXX + SS +R ++ L+ERCLV CA Y W RYA + ++V + A ++ RAC+ LR++P Sbjct: 273 FEEKIRRPYFHVKPLEEAQLINWAEYLSFEEVEAAEMXXXXXXXXXXXXXXXXXXXXXAKVLSSETVLLARRR-----------------VKVLYERCLVACALYEHFWIRYARYTENVERDIREARQIWRRACTVHLRYKP 397
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: U6JJ11_ECHGR (Pre-mRNA-processing factor 39 n=2 Tax=Echinococcus TaxID=6209 RepID=U6JJ11_ECHGR) HSP 1 Score: 68.9 bits (167), Expect = 3.260e-10 Identity = 45/142 (31.69%), Postives = 63/142 (44.37%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD-SVSGLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++AQL W++YL FE ++AA + K + L+ERCLV CA Y +W RYA + + + + SA EV RAC LR +P Sbjct: 252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEALLAVSATDDSQITPADVQLAK----------------------------KRVRVLYERCLVACALYEHMWIRYAKYLEFTEQDIRSAREVWRRACGVHLRAKP 365
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A8E0S795_9TREM (Pre-mRNA-processing factor 39 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S795_9TREM) HSP 1 Score: 68.2 bits (165), Expect = 5.970e-10 Identity = 46/143 (32.17%), Postives = 66/143 (46.15%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRS-ASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++ QL+ W+ YL FE A+AA + AS R+R ++ L+ERCLV CA Y W RYA + + V + A ++ RAC LR++P Sbjct: 261 FEEKIRRPYFHVKPLEEVQLINWADYLSFEEAEAAESESTVREELKAQNPELSETELTAKVLASDVVLLARRR------------------VKVLYERCLVACALYEHFWIRYARYTEYVERDIREARQIWRRACMTHLRYKP 385
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3TKJ8_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TKJ8_RODNA) HSP 1 Score: 67.0 bits (162), Expect = 1.490e-9 Identity = 45/142 (31.69%), Postives = 61/142 (42.96%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKDSVS-GLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++AQL W++YL FE ++AA + K + L+ERCLV CA Y LW RYA + + + A EV RAC LR +P Sbjct: 252 FEEKIRRPYFHVKPLEEAQLNNWAEYLSFEESEAASAEAVLNVPVTDGHSVTEPQITIAEVQLAK-----------------------KRVRVLYERCLVACALYEHLWIRYAKYLEYTECDISGAREVWRRACCVHLRTKP 370
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A5J4XXZ2_9CHLO (Pre-mRNA-processing factor 39-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXZ2_9CHLO) HSP 1 Score: 63.5 bits (153), Expect = 2.320e-8 Identity = 37/89 (41.57%), Postives = 46/89 (51.69%), Query Frame = 1 Query: 301 IERLFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYIKGC 567 I RL+ERCLV CASY LW RY W++ +S +A ERA S + RPE F A ER G D AR ++ V + I G Sbjct: 660 IIRLYERCLVACASYPDLWMRYVRWQE-ISSKAAAQVALERATSVHCKRRPEMQLFAAHFHERHGNADTARALFRLVTERLAPTLIPGA 747
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A0R3U9X9_MESCO (Uncharacterized protein n=4 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U9X9_MESCO) HSP 1 Score: 62.0 bits (149), Expect = 7.810e-8 Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 1 Query: 31 FERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGXXXXXXXXXXXXXXXXXXXXXXDRSASSAGTGGRKRPRAGEEGSSGNGGDRHKGIERLFERCLVPCASYWWLWERYAMWKD------------SVSGLESALEVAERACSPFLRWRP 453 FE +I+RP+FHVKPL++AQL W++YL FE ++AA ++ K + L+ERCLV CA Y +W RYA + + + +A +V RAC+ LR +P Sbjct: 277 FEEKIRRPYFHVKPLEEAQLSNWAEYLSFEESEAASAEALLAAPVTEDAPPQVTMEDVQQAK--------------------------KRVRILYERCLVACALYEHMWIRYAKYLEVTCIMIIDVLVYTEQDFCAARDVWRRACTVHLRSKP 403
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Match: A0A250WTD7_9CHLO (DNA topoisomerase 6 subunit B n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTD7_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 1.090e-7 Identity = 36/83 (43.37%), Postives = 42/83 (50.60%), Query Frame = 1 Query: 310 LFERCLVPCASYWWLWERYAMWKDSVSGLESALEVAERACSPFLRWRPEALFFRAELLERLGRRDEARGVYHRVLSEVRDRYI 558 L+ERCLVPCASY WERY W + E A +RA F R RPE F ER G + AR Y VL E+ R + Sbjct: 402 LYERCLVPCASYPEYWERYIRWLEKHGLNEEAHAALQRATITFCRSRPEIHLFAMHFDERHGDVEGARKRYKHVLEELAPRLL 484 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12888.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12888.2295.1 >prot_L-elsbetiae_contig12888.2295.1 ID=prot_L-elsbetiae_contig12888.2295.1|Name=mRNA_L-elsbetiae_contig12888.2295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp SLRGRQRRESFERRIQRPHFHVKPLDDAQLLAWSQYLDFEMAQAAGAAAAback to top mRNA from alignment at L-elsbetiae_contig12888:2840..4983+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12888.2295.1 ID=mRNA_L-elsbetiae_contig12888.2295.1|Name=mRNA_L-elsbetiae_contig12888.2295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2144bp|location=Sequence derived from alignment at L-elsbetiae_contig12888:2840..4983+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12888:2840..4983+ >mRNA_L-elsbetiae_contig12888.2295.1 ID=mRNA_L-elsbetiae_contig12888.2295.1|Name=mRNA_L-elsbetiae_contig12888.2295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig12888:2840..4983+ (Laminarionema elsbetiae ELsaHSoW15)back to top |