mRNA_L-elsbetiae_contig10.21.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.21.1
Unique NamemRNA_L-elsbetiae_contig10.21.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: D1J794_ECTSI (ATP synthase subunit b, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J794_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.380e-89
Identity = 142/157 (90.45%), Postives = 152/157 (96.82%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMSS 471
            MFDNY+S+LIIGTEKTGGLFDFDGTLPVIALQF+IFMF+LNFILYTPLLDTIDERNIYISKSLSEAT IL KSNELNLKYEKKTSKARKAVALDLLTYQ+LYK+ILEEKMKSSE FIDKFLTETTKNFE+NKE ILKSFDTEIDSLSN+IMKK++ S
Sbjct:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKNILEEKMKSSEDFIDKFLTETTKNFEENKENILKSFDTEIDSLSNEIMKKMIKS 157          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A1I9LVV6_9PHAE (ATP synthase subunit b, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVV6_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 2.860e-82
Identity = 132/156 (84.62%), Postives = 145/156 (92.95%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MFDNY+ +LII TEKTGGLFDFDGTLPVIA+QF+IFMF+LNFILYTPLLDTIDERNIYISKSLSEAT+IL K+N+LN+KYEKKTSKARKAVALDLL YQKLYKDILEEKMKSSE  IDKFL ETTKNFE+NK  ILKSFDTEI SLS QIMKK+++
Sbjct:    1 MFDNYNYILIISTEKTGGLFDFDGTLPVIAIQFIIFMFILNFILYTPLLDTIDERNIYISKSLSEATNILTKANKLNIKYEKKTSKARKAVALDLLIYQKLYKDILEEKMKSSESVIDKFLIETTKNFEENKGNILKSFDTEIYSLSKQIMKKLIT 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A0S0GJT6_COSCS (ATP synthase CF0 B' chain subunit II n=27 Tax=Laminariales TaxID=2886 RepID=A0A0S0GJT6_COSCS)

HSP 1 Score: 245 bits (625), Expect = 4.570e-81
Identity = 127/156 (81.41%), Postives = 145/156 (92.95%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MF NY+S+LIIGTEKTGGLFDFDGTLP+IALQFVIFMF+LNFILYTPLLDTIDERN+YI KSL EATS+L KSN+LN+KYE KTSKARKA  LDLLTYQKLYKDILEEKMKSS++FIDKFL ETT+NFE+NK++IL SFD EIDSLS+QIM K+++
Sbjct:    1 MFYNYNSILIIGTEKTGGLFDFDGTLPIIALQFVIFMFILNFILYTPLLDTIDERNLYIKKSLDEATSVLTKSNQLNVKYEAKTSKARKAAKLDLLTYQKLYKDILEEKMKSSQLFIDKFLIETTENFENNKDSILTSFDNEIDSLSSQIMTKLLT 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A8F0F9X4_9PHAE (CF0 subunit II n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9X4_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 4.370e-79
Identity = 124/156 (79.49%), Postives = 140/156 (89.74%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MF NY+S+LIIGTEKTGGLFDFDGTLPVI  QFV+FMF+LNF+LYTPLLDTIDERN YI KSL +ATS+L KSNELN KYEKKTSKARKA  +D+L YQKLYKDILEEKMKSS++FIDKFL ETT+NFE+NK+ IL SFD EIDSLSNQIM KI++
Sbjct:    1 MFHNYNSILIIGTEKTGGLFDFDGTLPVIVFQFVLFMFILNFVLYTPLLDTIDERNSYIKKSLDKATSVLIKSNELNKKYEKKTSKARKAAKMDILIYQKLYKDILEEKMKSSQIFIDKFLVETTENFENNKDNILTSFDNEIDSLSNQIMTKIVT 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A8F0FAP4_9PHAE (CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP4_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 6.210e-79
Identity = 124/156 (79.49%), Postives = 143/156 (91.67%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MF NY+S+LIIGTEKTGGLFDFDGTLPVIA+QFV+FMF+LNFILYTPLLDTIDERNIYI  SL EAT++LAKSN+LN KYEKK SKARKA  LDL+TYQKLYKDIL+EKMKSS++FID FL ETTKNFE+NK+ IL SFD+EIDSLS+QI+ KI++
Sbjct:    1 MFYNYNSILIIGTEKTGGLFDFDGTLPVIAIQFVLFMFILNFILYTPLLDTIDERNIYIKTSLEEATNVLAKSNQLNTKYEKKASKARKAAKLDLITYQKLYKDILDEKMKSSQIFIDDFLVETTKNFENNKDNILVSFDSEIDSLSSQIITKILT 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: D1GJH9_FUCVE (ATP synthase CF0 B' chain subunit II n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH9_FUCVE)

HSP 1 Score: 219 bits (558), Expect = 7.340e-71
Identity = 114/156 (73.08%), Postives = 133/156 (85.26%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MF +Y+S+ I+ TEKTGGLFDFDGTLPVI LQF+ FMF+LNFILY PLLDTIDERNIYI KSL EAT++L  +N+LN+KYE K SKARKA  LDLLTYQ LYKDILEEKMKSS++F D+FL ETT NFE NK+ IL SFD EIDSL++QIM KI++
Sbjct:    1 MFYHYNSIFILVTEKTGGLFDFDGTLPVIGLQFIFFMFILNFILYNPLLDTIDERNIYIKKSLDEATNVLTNANQLNVKYENKASKARKAAKLDLLTYQNLYKDILEEKMKSSQIFTDEFLNETTANFEINKDEILGSFDKEIDSLTSQIMNKILT 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A1L2F1S8_9PHAE (AtpG n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.440e-69
Identity = 115/156 (73.72%), Postives = 131/156 (83.97%), Query Frame = 1
Query:    1 MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            MF NYSS+LII TEKTGGLFDFDGTLPVI+LQF+IFMF+LN ILY PLLDTID RN YI KSL EA  IL  +N+LN K+E+K SKARKA  LDL+ YQ LYKDILEEKMKSS++FID FLTETT+NFE NK+ IL  FD EIDSL++QIM KI+S
Sbjct:    1 MFYNYSSILIIVTEKTGGLFDFDGTLPVISLQFIIFMFILNSILYNPLLDTIDARNTYIKKSLDEAAKILTNANQLNEKFEEKASKARKAAKLDLVIYQNLYKDILEEKMKSSQIFIDDFLTETTENFESNKDEILIGFDNEIDSLTSQIMTKILS 156          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A8F0F723_9PHAE (CF0 subunit II n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F723_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.150e-60
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 1
Query:   10 NYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIM 465
            N++S+L+IGTEK GGLFDFDGTLP+IALQFVI MF+LNFILYTPLLD ID RNIY+ + L  A+ +L  S  LN +YEKKTS+ARKA  LDL+ YQKL K+ILEEK+K+S+  IDKFL E T NFE NKE+IL SF+ EI+SLS QIM KI+
Sbjct:    4 NFNSILLIGTEKPGGLFDFDGTLPIIALQFVILMFLLNFILYTPLLDYIDGRNIYVDECLKAASFLLKNSKALNAEYEKKTSQARKAAKLDLVIYQKLSKEILEEKVKTSQASIDKFLNEMTNNFEQNKESILTSFENEIESLSGQIMSKIL 155          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A8E5XRC8_9PHAE (ATP synthase CF0 beta' subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRC8_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.210e-58
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 1
Query:   13 YSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            Y  VL++ TEKTGGLFDFDGTLPVI LQF+  MFVLN +LY PLL+TID RN YI +SL +A++ L ++N+LNLKYE K ++ARKA  +D++TYQKLYKDIL+ +M+SS+  ID F+ ETTKNF+DNKE IL S D EIDSLSNQI  KI+S
Sbjct:   19 YDFVLMLATEKTGGLFDFDGTLPVIVLQFLGLMFVLNSMLYAPLLETIDTRNFYIRRSLEKASTFLTEANQLNLKYENKATRARKAAKIDIVTYQKLYKDILDNEMRSSQNSIDDFVAETTKNFDDNKEKILASLDNEIDSLSNQITTKILS 170          
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Match: A0A2I4Q2L6_9PHAE (ATP synthase CF0 B' chain subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2L6_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.730e-55
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = 1
Query:   10 NYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLDTIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQKLYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQIMKKIMS 468
            N++++ +I TEKTGGLFDFDGTL VI  QF++ M +L  +LY PLLD +DER  Y+ +SL EA++ILA+SN LN KYEKKTS+ARK V LDLL YQKLYKD+L++KMKS + FID+FL  T KN E +KE ILKSFDT+I+SL+N++M K+++
Sbjct:    3 NFNTLFLITTEKTGGLFDFDGTLIVIVFQFILLMVILPSLLYNPLLDIMDERMTYMEESLEEASTILAESNRLNSKYEKKTSRARKVVELDLLMYQKLYKDLLDDKMKSLQFFIDEFLMVTIKNSETSKEIILKSFDTQIESLTNEMMVKLLA 155          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J794_ECTSI1.380e-8990.45ATP synthase subunit b, chloroplastic n=8 Tax=Ecto... [more]
A0A1I9LVV6_9PHAE2.860e-8284.62ATP synthase subunit b, chloroplastic n=1 Tax=Pleu... [more]
A0A0S0GJT6_COSCS4.570e-8181.41ATP synthase CF0 B' chain subunit II n=27 Tax=Lami... [more]
A0A8F0F9X4_9PHAE4.370e-7979.49CF0 subunit II n=1 Tax=Chorda asiatica TaxID=12815... [more]
A0A8F0FAP4_9PHAE6.210e-7979.49CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=... [more]
D1GJH9_FUCVE7.340e-7173.08ATP synthase CF0 B' chain subunit II n=3 Tax=Fucac... [more]
A0A1L2F1S8_9PHAE2.440e-6973.72AtpG n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2... [more]
A0A8F0F723_9PHAE1.150e-6067.76CF0 subunit II n=1 Tax=Protohalopteris sp. TaxID=2... [more]
A0A8E5XRC8_9PHAE1.210e-5865.13ATP synthase CF0 beta' subunit n=1 Tax=Ishige okam... [more]
A0A2I4Q2L6_9PHAE4.730e-5561.44ATP synthase CF0 B' chain subunit II n=1 Tax=Dicty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:41377..41850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.6
Seed ortholog evalue2.4e-70
Seed eggNOG ortholog2880.D1J794
Preferred nameatpG
KEGG koko:K02109
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGs2S8NX@2759,COG0711@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size474
Cds size474
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815232.1913164-CDS-L-elsbetiae_contig10:41376..418501622815232.1913164-CDS-L-elsbetiae_contig10:41376..41850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 41377..41850 +
1691682784.0103133-CDS-L-elsbetiae_contig10:41376..418501691682784.0103133-CDS-L-elsbetiae_contig10:41376..41850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 41377..41850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.21.1prot_L-elsbetiae_contig10.21.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 41377..41850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.21.1

>prot_L-elsbetiae_contig10.21.1 ID=prot_L-elsbetiae_contig10.21.1|Name=mRNA_L-elsbetiae_contig10.21.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MFDNYSSVLIIGTEKTGGLFDFDGTLPVIALQFVIFMFVLNFILYTPLLD
TIDERNIYISKSLSEATSILAKSNELNLKYEKKTSKARKAVALDLLTYQK
LYKDILEEKMKSSEVFIDKFLTETTKNFEDNKETILKSFDTEIDSLSNQI
MKKIMSS*
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mRNA from alignment at L-elsbetiae_contig10:41377..41850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.21.1 ID=mRNA_L-elsbetiae_contig10.21.1|Name=mRNA_L-elsbetiae_contig10.21.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig10:41377..41850+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGACAACTATAGCTCCGTTTTAATAATAGGTACGGAAAAAACTGG AGGATTGTTTGATTTCGATGGGACACTACCAGTTATAGCATTACAATTTG TTATTTTTATGTTTGTTCTAAATTTCATTTTATATACACCTTTATTAGAT ACTATTGACGAACGAAATATTTATATTAGTAAAAGTTTATCTGAAGCTAC AAGTATACTAGCAAAGTCGAATGAATTAAACTTAAAATATGAAAAGAAAA CCTCTAAAGCTCGTAAAGCAGTAGCATTAGATTTGTTAACGTATCAAAAA TTATATAAAGATATTTTAGAAGAAAAAATGAAATCTTCCGAAGTATTTAT TGATAAATTTTTAACTGAGACCACTAAGAATTTTGAAGATAATAAGGAAA CTATTTTAAAAAGTTTTGATACTGAAATAGATTCTTTAAGTAATCAAATT ATGAAAAAAATAATGAGCTCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:41377..41850+

>mRNA_L-elsbetiae_contig10.21.1 ID=mRNA_L-elsbetiae_contig10.21.1|Name=mRNA_L-elsbetiae_contig10.21.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig10:41377..41850+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGACAACTATAGCTCCGTTTTAATAATAGGTACGGAAAAAACTGG
AGGATTGTTTGATTTCGATGGGACACTACCAGTTATAGCATTACAATTTG
TTATTTTTATGTTTGTTCTAAATTTCATTTTATATACACCTTTATTAGAT
ACTATTGACGAACGAAATATTTATATTAGTAAAAGTTTATCTGAAGCTAC
AAGTATACTAGCAAAGTCGAATGAATTAAACTTAAAATATGAAAAGAAAA
CCTCTAAAGCTCGTAAAGCAGTAGCATTAGATTTGTTAACGTATCAAAAA
TTATATAAAGATATTTTAGAAGAAAAAATGAAATCTTCCGAAGTATTTAT
TGATAAATTTTTAACTGAGACCACTAAGAATTTTGAAGATAATAAGGAAA
CTATTTTAAAAAGTTTTGATACTGAAATAGATTCTTTAAGTAATCAAATT
ATGAAAAAAATAATGAGCTCATAAATGTTTGACAACTATAGCTCCGTTTT
AATAATAGGTACGGAAAAAACTGGAGGATTGTTTGATTTCGATGGGACAC
TACCAGTTATAGCATTACAATTTGTTATTTTTATGTTTGTTCTAAATTTC
ATTTTATATACACCTTTATTAGATACTATTGACGAACGAAATATTTATAT
TAGTAAAAGTTTATCTGAAGCTACAAGTATACTAGCAAAGTCGAATGAAT
TAAACTTAAAATATGAAAAGAAAACCTCTAAAGCTCGTAAAGCAGTAGCA
TTAGATTTGTTAACGTATCAAAAATTATATAAAGATATTTTAGAAGAAAA
AATGAAATCTTCCGAAGTATTTATTGATAAATTTTTAACTGAGACCACTA
AGAATTTTGAAGATAATAAGGAAACTATTTTAAAAAGTTTTGATACTGAA
ATAGATTCTTTAAGTAATCAAATTATGAAAAAAATAATGAGCTCATAA
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