mRNA_L-elsbetiae_contig10140.193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10140.193.1
Unique NamemRNA_L-elsbetiae_contig10140.193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A6H5J5R6_9PHAE (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J5R6_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.620e-48
Identity = 76/81 (93.83%), Postives = 81/81 (100.00%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHDADML++IL+EKGVPAEPLSDYINAFRHGCPPHGGGG+GLERIVFLYLGLDNIRKASMFPRDPSRC+P
Sbjct:  648 RGQEICSGAQRCHDADMLMQILEEKGVPAEPLSDYINAFRHGCPPHGGGGIGLERIVFLYLGLDNIRKASMFPRDPSRCSP 728          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A7S2CUT1_9EUKA (Aspartate--tRNA ligase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CUT1_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 4.960e-41
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RG+EICSGAQR HD  +L+E +  KGVP EPL  Y++A RHG PPHGGGG+G+ER+VFLYLGLDN+RKASMFPRDPSRC+P
Sbjct:   86 RGEEICSGAQRVHDPQLLIETIASKGVPLEPLKAYVDAMRHGMPPHGGGGIGMERVVFLYLGLDNVRKASMFPRDPSRCSP 166          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A835YQK2_9STRA (Aspartate--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQK2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.040e-40
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHDAD LV+I++ KGVP EPL  YI++FR GC PHGG G+GLER+VFLYLGLDN+RKASMFPRDP RCTP
Sbjct:  489 RGQEICSGAQRCHDADKLVQIIESKGVPVEPLESYISSFRAGCVPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPRRCTP 569          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A7S3H584_9STRA (Aspartate--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H584_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.440e-39
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHD  ML + + EKG+P EPL  YI++F+HG  PH G G+GL+R+VFLYLGLDN+RKASMFPRDP+RCTP
Sbjct:   35 RGQEICSGAQRCHDPVMLEKRILEKGLPLEPLQSYIDSFKHGVSPHAGAGIGLDRVVFLYLGLDNVRKASMFPRDPNRCTP 115          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: K8YYM7_NANGC (Aspartate--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYM7_NANGC)

HSP 1 Score: 141 bits (355), Expect = 3.520e-38
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQR HD D+L   +  KG+P EPL  Y+NAFRHG PPHGG G+GLER+VFLYLGLDN+RKASMFPRDP+RC P
Sbjct:  395 RGQEICSGAQRIHDPDLLTRTIAAKGLPMEPLESYVNAFRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCEP 475          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: K0T7N7_THAOC (Aspartate--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7N7_THAOC)

HSP 1 Score: 130 bits (328), Expect = 5.980e-38
Identity = 57/82 (69.51%), Postives = 68/82 (82.93%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVP-AEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHD D++ EI+ +KG+   + L  YI +FRHG  PH G G+GLER+VFLYLGLDN+RKASMFPRDP+RCTP
Sbjct:   18 RGQEICSGAQRCHDPDVVTEIIHKKGIEIGDGLKTYIESFRHGVSPHAGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCTP 99          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: W7TE52_9STRA (Aspartate--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE52_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.360e-37
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQR HD D+L   +  KG+P EPL  Y+NAFRHG PPHGG G+GLER+VFLYLGLDN+RKASMFPRDP+RC P
Sbjct:  521 RGQEICSGAQRIHDPDLLTRTIAAKGLPMEPLESYVNAFRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCEP 601          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A8J9X6U5_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6U5_PHATR)

HSP 1 Score: 133 bits (335), Expect = 1.020e-36
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGVPA-EPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHD D++ +ILQEKG+   + L  YI +FRHG  PH G G+GLER+VFLYLGLDN+RKASMFPRDP+RCTP
Sbjct:  209 RGQEICSGAQRCHDPDLVEKILQEKGIEVGDGLKSYIESFRHGVSPHAGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCTP 290          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A7R9WNB7_9STRA (Aspartate--tRNA ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNB7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.710e-36
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGV-PAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHD ++L++ILQ+KGV P + L  YI +FRHG  PH G G+GLER+VFLYLGL+NIRKASMFPRDP+RC+P
Sbjct:  232 RGQEICSGAQRCHDPELLLDILQQKGVSPGDGLDKYIESFRHGVDPHAGAGIGLERVVFLYLGLNNIRKASMFPRDPNRCSP 313          
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Match: A0A1Z5KKG9_FISSO (Aspartate--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKG9_FISSO)

HSP 1 Score: 137 bits (344), Expect = 4.460e-36
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 3
Query:    3 RGQEICSGAQRCHDADMLVEILQEKGV-PAEPLSDYINAFRHGCPPHGGGGVGLERIVFLYLGLDNIRKASMFPRDPSRCTP 245
            RGQEICSGAQRCHD D++V+ LQ+KG+ P E LS YI +FRHG  PH G G+GLER+VFLYLGLDN+RKASMFPRDP+RCTP
Sbjct:  509 RGQEICSGAQRCHDPDLVVKNLQDKGIEPGEGLSAYIESFRHGVSPHAGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCTP 590          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10140.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J5R6_9PHAE2.620e-4893.83Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S2CUT1_9EUKA4.960e-4172.84Aspartate--tRNA ligase n=1 Tax=Haptolina brevifila... [more]
A0A835YQK2_9STRA2.040e-4079.01Aspartate--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A7S3H584_9STRA1.440e-3971.60Aspartate--tRNA ligase n=1 Tax=Spumella elongata T... [more]
K8YYM7_NANGC3.520e-3874.07Aspartate--tRNA ligase n=2 Tax=Monodopsidaceae Tax... [more]
K0T7N7_THAOC5.980e-3869.51Aspartate--tRNA ligase n=1 Tax=Thalassiosira ocean... [more]
W7TE52_9STRA1.360e-3774.07Aspartate--tRNA ligase n=1 Tax=Nannochloropsis gad... [more]
A0A8J9X6U5_PHATR1.020e-3671.95Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A7R9WNB7_9STRA1.710e-3671.95Aspartate--tRNA ligase n=1 Tax=Craspedostauros aus... [more]
A0A1Z5KKG9_FISSO4.460e-3674.39Aspartate--tRNA ligase n=2 Tax=Fistulifera solaris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10140contigL-elsbetiae_contig10140:1505..2628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size246
Cds size171
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10140.193.1prot_L-elsbetiae_contig10140.193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10140 1579..2628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.7459533-UTR-L-elsbetiae_contig10140:1504..15781622815245.7459533-UTR-L-elsbetiae_contig10140:1504..1578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10140 1505..1578 -
1691682793.2927804-UTR-L-elsbetiae_contig10140:1504..15781691682793.2927804-UTR-L-elsbetiae_contig10140:1504..1578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10140 1505..1578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.7573981-CDS-L-elsbetiae_contig10140:1578..16281622815245.7573981-CDS-L-elsbetiae_contig10140:1578..1628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 1579..1628 -
1691682793.3122044-CDS-L-elsbetiae_contig10140:1578..16281691682793.3122044-CDS-L-elsbetiae_contig10140:1578..1628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 1579..1628 -
1622815245.7732673-CDS-L-elsbetiae_contig10140:1984..20711622815245.7732673-CDS-L-elsbetiae_contig10140:1984..2071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 1985..2071 -
1691682793.322244-CDS-L-elsbetiae_contig10140:1984..20711691682793.322244-CDS-L-elsbetiae_contig10140:1984..2071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 1985..2071 -
1622815245.7841375-CDS-L-elsbetiae_contig10140:2594..26281622815245.7841375-CDS-L-elsbetiae_contig10140:2594..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 2595..2628 -
1691682793.3419766-CDS-L-elsbetiae_contig10140:2594..26281691682793.3419766-CDS-L-elsbetiae_contig10140:2594..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10140 2595..2628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10140.193.1

>prot_L-elsbetiae_contig10140.193.1 ID=prot_L-elsbetiae_contig10140.193.1|Name=mRNA_L-elsbetiae_contig10140.193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
YAGRRSVPGHNGAMTPTCSWRYSKRRVFRQNRCPTTSMPSDTGALLMAVA
AWAWSA*
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mRNA from alignment at L-elsbetiae_contig10140:1505..2628-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10140.193.1 ID=mRNA_L-elsbetiae_contig10140.193.1|Name=mRNA_L-elsbetiae_contig10140.193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1124bp|location=Sequence derived from alignment at L-elsbetiae_contig10140:1505..2628- (Laminarionema elsbetiae ELsaHSoW15)
TACGCGGGCAGGAGATCTGTTCCGGGGCACAACGGTGAGATTGATTGATA TGGTACTTTTCATGCGTGATGTTGCTGGCTGTCCAAGTGAGGATCGAGTT TGTGTTGTTCATTTTTGGTCGGCAGTCTGTCGACCGATAGATGTCATGCA ACGAGCGAGACCACCCCTCGAGCGTTGGTGGGTTTTGTATAGATGCCGTT TGTTTTATGCGGCAGGGACGTACATATTATGCTTTTTTTGTGGACGGGCG CGTTCGTTGGCCTTCGATGCTGGTTGTTTCGGTAAGGGCGTCGGCTCTGG GGTATTGCCTGACCCGGAAAGAGTTCTCCGAAGTATTGCAATATTGTGGT AGCTTTCGTCGTTTGTTGGCTACAGACTGCCGTCTCACCGGAGGGCAGCA GATTTCACACCTGCCAGCACTTGAGCCAAGCTTCCGTCTTGGCCGACATG CCTTTCTTTGTGACGGCGAATTCGTCCTGGTTGCGCGTGTGTTGTTGTTT CTTGATTCTGCCCTTCCCTTGCAATTGGCCTGTGCGACGGGTGTGTTTTG TTTGTAGGTGCCATGACGCCGACATGCTCGTGGAGATACTCCAAGAGAAG GGTGTTCCGGCAGAACCGCTGTCCGACTACATCAATGCCTTCAGGTATAC ACATTCGGCATCTTTTTCTCCGTGCATGTTGACGTTGATAGGCAGGGCTT CGTTGTTATTGTGTTGCCGCGGTTGTGCAACAGCTGCCTGGCGCCGTGGC GCTTGTGAGGCGATCCAGCCATGATGGGTTCATTTTACCCGAAGCGCCAC CTACCCGTTTCCCCGCCCGCCCTTGTGCCCAAGCCCAGCTGCGACATATG ATCGGATGTCCGACGTGCATACCTTGAGTCACATGCTATACTATGCCGGG CCACGTGATGCCATGTCATGTCCGTATGGTCCCGGCGGTATCTACTGTTT GACGTCAGCTTTTCCCATCCCCCGGCACGATCGATCTCGTCCTTGCTCAG ACACGGGTGCCCTCCTCATGGCGGTGGCGGCGTGGGCTTGGAGCGCATAG TGTTTCTCTATCTGGGTCTGGACAACATTAGAAAAGCCTCCATGTTCCCG AGAGATCCCAGCCGTTGCACCCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10140:1505..2628-

>mRNA_L-elsbetiae_contig10140.193.1 ID=mRNA_L-elsbetiae_contig10140.193.1|Name=mRNA_L-elsbetiae_contig10140.193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig10140:1505..2628- (Laminarionema elsbetiae ELsaHSoW15)
TACGCGGGCAGGAGATCTGTTCCGGGGCACAACGTACGCGGGCAGGAGAT
CTGTTCCGGGGCACAACGGTGCCATGACGCCGACATGCTCGTGGAGATAC
TCCAAGAGAAGGGTGTTCCGGCAGAACCGCTGTCCGACTACATCAATGCC
TTCAGGTGCCATGACGCCGACATGCTCGTGGAGATACTCCAAGAGAAGGG
TGTTCCGGCAGAACCGCTGTCCGACTACATCAATGCCTTCAGACACGGGT
GCCCTCCTCATGGCGGTGGCGGCGTGGGCTTGGAGCGCATAGACACGGGT
GCCCTCCTCATGGCGGTGGCGGCGTGGGCTTGGAGCGCATAG
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