mRNA_L-elsbetiae_contig9983.18908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9983.18908.1
Unique NamemRNA_L-elsbetiae_contig9983.18908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9983.18908.1 vs. uniprot
Match: D7G2K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.130e-33
Identity = 87/131 (66.41%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 SHTPLAGIPPCIICTQ-GKPMLVIANHKLEGKSASEPKPLLVLRKILVDVXXXXXXXXXXXXXXXXXXXXTAEGEPGGYAPRRPQRQQRVEYRVVGRVTRKTIFKTRPKPLIRKLGDGGGHGGGSTARSCM 390
            S  PL+G P   + ++ GK MLVI+NHKLEGK+ASEPKPLLVLRK++VDV      XXXXXXXXXXXXXX             P   QRVEYRVVGRV RKTIFKTRPKPLI+KLG GGG  GGSTARSCM
Sbjct:   10 SKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVNDENCGXXXXXXXXXXXXXXXXXXXXXXXXXXPPA--QRVEYRVVGRVARKTIFKTRPKPLIKKLGSGGGRAGGSTARSCM 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9983.18908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2K4_ECTSI2.130e-3366.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9983contigL-elsbetiae_contig9983:3684..4139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChromosome transmission fidelity protein 8
Ec32 orthologEc-11_002560.1
Exons2
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.2080257-CDS-L-elsbetiae_contig9983:3683..38531622817056.2080257-CDS-L-elsbetiae_contig9983:3683..3853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9983 3684..3853 -
1691684013.9636657-CDS-L-elsbetiae_contig9983:3683..38531691684013.9636657-CDS-L-elsbetiae_contig9983:3683..3853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9983 3684..3853 -
1622817056.2202883-CDS-L-elsbetiae_contig9983:3916..41391622817056.2202883-CDS-L-elsbetiae_contig9983:3916..4139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9983 3917..4139 -
1691684013.974416-CDS-L-elsbetiae_contig9983:3916..41391691684013.974416-CDS-L-elsbetiae_contig9983:3916..4139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9983 3917..4139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9983.18908.1prot_L-elsbetiae_contig9983.18908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9983 3684..4139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9983.18908.1

>prot_L-elsbetiae_contig9983.18908.1 ID=prot_L-elsbetiae_contig9983.18908.1|Name=mRNA_L-elsbetiae_contig9983.18908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
SHTPLAGIPPCIICTQGKPMLVIANHKLEGKSASEPKPLLVLRKILVDVD
DENSNGGGGNNGDGDGSGATAEGEPGGYAPRRPQRQQRVEYRVVGRVTRK
TIFKTRPKPLIRKLGDGGGHGGGSTARSCM*
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mRNA from alignment at L-elsbetiae_contig9983:3684..4139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9983.18908.1 ID=mRNA_L-elsbetiae_contig9983.18908.1|Name=mRNA_L-elsbetiae_contig9983.18908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig9983:3684..4139- (Laminarionema elsbetiae ELsaHSoW15)
TCACATACCCCCCTTGCGGGAATCCCCCCCTGCATCATTTGCACCCAGGG
TAAACCAATGCTGGTGATTGCTAACCACAAGCTGGAAGGGAAGTCAGCCT
CGGAGCCTAAGCCCCTCCTCGTGCTGAGAAAGATCCTCGTCGACGTTGAC
GACGAGAACAGCAACGGCGGCGGCGGCAACAACGGCGATGGTGACGGCAG
CGGCGCTACAGCGGAGGGTGAGCGTGAAGTCGGCGGTGGCGGTGGCGGTG
GCGGTGGCGGTGGCGGCGGCGCGGGCGAGGGAGGAGCTGGGGGGTACGCA
CCCAGGCGGCCGCAGCGGCAGCAGAGGGTGGAATACAGAGTAGTAGGGAG
GGTAACGCGGAAGACGATCTTCAAGACCAGGCCAAAGCCGCTCATCAGGA
AGCTCGGCGACGGCGGCGGCCATGGTGGCGGCTCCACCGCGCGGTCCTGC
ATGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9983:3684..4139-

>mRNA_L-elsbetiae_contig9983.18908.1 ID=mRNA_L-elsbetiae_contig9983.18908.1|Name=mRNA_L-elsbetiae_contig9983.18908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig9983:3684..4139- (Laminarionema elsbetiae ELsaHSoW15)
TCACATACCCCCCTTGCGGGAATCCCCCCCTGCATCATTTGCACCCAGGG
TAAACCAATGCTGGTGATTGCTAACCACAAGCTGGAAGGGAAGTCAGCCT
CGGAGCCTAAGCCCCTCCTCGTGCTGAGAAAGATCCTCGTCGACGTTGAC
GACGAGAACAGCAACGGCGGCGGCGGCAACAACGGCGATGGTGACGGCAG
CGGCGCTACAGCGGAGGGTGAGCTCACATACCCCCCTTGCGGGAATCCCC
CCCTGCATCATTTGCACCCAGGGTAAACCAATGCTGGTGATTGCTAACCA
CAAGCTGGAAGGGAAGTCAGCCTCGGAGCCTAAGCCCCTCCTCGTGCTGA
GAAAGATCCTCGTCGACGTTGACGACGAGAACAGCAACGGCGGCGGCGGC
AACAACGGCGATGGTGACGGCAGCGGCGCTACAGCGGAGGGTGAGCCTGG
GGGGTACGCACCCAGGCGGCCGCAGCGGCAGCAGAGGGTGGAATACAGAG
TAGTAGGGAGGGTAACGCGGAAGACGATCTTCAAGACCAGGCCAAAGCCG
CTCATCAGGAAGCTCGGCGACGGCGGCGGCCATGGTGGCGGCTCCACCGC
GCGGTCCTGCATGTAGCTGGGGGGTACGCACCCAGGCGGCCGCAGCGGCA
GCAGAGGGTGGAATACAGAGTAGTAGGGAGGGTAACGCGGAAGACGATCT
TCAAGACCAGGCCAAAGCCGCTCATCAGGAAGCTCGGCGACGGCGGCGGC
CATGGTGGCGGCTCCACCGCGCGGTCCTGCATGTAG
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