mRNA_L-elsbetiae_contig9981.18906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE) HSP 1 Score: 271 bits (694), Expect = 5.370e-88 Identity = 178/289 (61.59%), Postives = 191/289 (66.09%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELKKQQQAGGKSFHTSAATFAALQPSC---YADSGTGTLSPAVVAASVDGVAGVGIHSE--------------SPLSFGWATGEAAXXXXXXXXXXXXXXSNRFAAASSTPTQSDSEAVDGGIAARLSQMSLLGGCDGGQQQARSTGAPGAPPLSAFPPLHAVLASHLALLGPAACSRIGLRIGAE 816 MTVRVRLQR GRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKEL+K+Q AGGK FHTSAA F ALQP +DS TL +AS DG GI + PLS W TG ++R A ST T S + + GGIA LS+MSL G QQ A+ PL AVLASHL+LLGPAACS IGL + AE Sbjct: 1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQKKQ-AGGKGFHTSAACFNALQPGAGEPASDSPPRTL----FSASDDGELSDGIATRRPSSAVSQSPPLETGPLSSWWGTGAERE-------------THRNGEAVST-TASGPDELGGGIALDLSRMSLTERSAGDQQ--------------AWSPLRAVLASHLSLLGPAACSVIGLLVDAE 256
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA) HSP 1 Score: 144 bits (363), Expect = 3.580e-40 Identity = 63/85 (74.12%), Postives = 79/85 (92.94%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 255 M VR+RLQRFG+RNRPFYR+V A+ RAPRDGKF+E++GTYNP+ATR+G+KE+ K DRI+YW+SVGAQPSDRV+W+LG+FGILPP Sbjct: 1 MVVRLRLQRFGKRNRPFYRMVAANVRAPRDGKFLEIIGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPP 85
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: B8BU89_THAPS (RT16, ribosomal protein 16 mitochondrial small ribosomal subunit (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8BU89_THAPS) HSP 1 Score: 142 bits (359), Expect = 8.290e-40 Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 255 M VR+RLQRFGR + PFYR+V ADSRAPRDGKF+E+VGTYNP+A +G+KE+ K DR+RYWISVGAQPSDRVAW+LG+FGILPP Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAADSRAPRDGKFLEIVGTYNPIANNAGIKEIRLKADRLRYWISVGAQPSDRVAWILGKFGILPP 85
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.340e-39 Identity = 65/101 (64.36%), Postives = 85/101 (84.16%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKE 303 M VR+RLQRFGR +RPFYR+V ADSRAPRDGKF+E+VGTYNP+AT+ G+KE+ K DR++YW+ VGAQPSDRV+W+LG+FG+LPP V+ K +P+K+ Sbjct: 1 MPVRLRLQRFGRTHRPFYRMVAADSRAPRDGKFLEIVGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVSLQKM-IPKKD 100
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A6U0J4Z2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0J4Z2_9STRA) HSP 1 Score: 141 bits (355), Expect = 5.690e-39 Identity = 66/101 (65.35%), Postives = 83/101 (82.18%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKE 303 M VR+RLQRFGR + PFYR+V AD RAPRDG+F+ELVGTYNP+A +G+KE+ K DR+RYW+SVGAQPSDRVAW+LG+FG+LPP P ++ VPRK+ Sbjct: 1 MVVRLRLQRFGRTHAPFYRMVAADGRAPRDGRFLELVGTYNPIANSAGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGVLPPPP-PRYSVEKMVPRKD 100
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S1H3T9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3T9_9STRA) HSP 1 Score: 139 bits (349), Expect = 4.260e-38 Identity = 60/85 (70.59%), Postives = 77/85 (90.59%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 255 M VR+RLQRFGR++ PFYR+V AD RAPRDGKF+E+VGTYNP+A++ G+KE+ K DR++YW++VGAQPSDRVAW+LG+FGILPP Sbjct: 1 MVVRLRLQRFGRKHLPFYRMVAADHRAPRDGKFLEVVGTYNPIASKDGIKEIRLKTDRLKYWLAVGAQPSDRVAWILGKFGILPP 85
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S2KAU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAU0_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.480e-38 Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWK 309 M VR+RLQRFGR + PFYR+V AD RA RDGKF+E++GTYNP+A + G+KEV K DR +YW+SVGAQPSDRV WLLG+FGILPP VP R ++++P++E K Sbjct: 13 MVVRLRLQRFGRTHTPFYRIVAADHRARRDGKFLEILGTYNPIANKDGIKEVRLKSDRFKYWLSVGAQPSDRVGWLLGKFGILPPPPVP-HRPQRSIPKEERK 114
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV) HSP 1 Score: 139 bits (349), Expect = 4.520e-38 Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 255 M VR+RLQRFG++ PFYR+V A+SRAPRDGKF E+VGTYNP+A SG+KE+ K DR+RYW+SVGAQPSDRVAW+LG+FGILPP Sbjct: 1 MVVRLRLQRFGQKKLPFYRMVAANSRAPRDGKFFEIVGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPP 85
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S4NGP0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGP0_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.800e-37 Identity = 63/107 (58.88%), Postives = 88/107 (82.24%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELKK 321 M VR+RLQRFG+ + PFYR+V A+S+APRDGKF+E++GTYNP+A + G+KE+ K DR++YW+SVGAQPSDRVAW+LG+FGILPP P ++ +P+K+ +E +K Sbjct: 1 MVVRLRLQRFGKTHSPFYRMVAANSKAPRDGKFLEILGTYNPMANKHGIKEIRLKTDRLKYWVSVGAQPSDRVAWVLGKFGILPPPP-PRYSPQRMIPKKDREEQEK 106
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Match: A0A7S2V6U9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6U9_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.090e-37 Identity = 61/85 (71.76%), Postives = 77/85 (90.59%), Query Frame = 1 Query: 1 MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPP 255 M VR+RLQRFGR ++PFYR+V ADSR+PR+GKF+E+VGTYNP+A++ GVKE+ FK DR++YW+ VGAQPSDRVAWLLGQ G+LPP Sbjct: 1 MVVRMRLQRFGRTHQPFYRIVTADSRSPRNGKFLEIVGTYNPIASKDGVKELHFKFDRVKYWLGVGAQPSDRVAWLLGQSGLLPP 85 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9981.18906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9981.18906.1 >prot_L-elsbetiae_contig9981.18906.1 ID=prot_L-elsbetiae_contig9981.18906.1|Name=mRNA_L-elsbetiae_contig9981.18906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=279bp MTVRVRLQRFGRRNRPFYRVVVADSRAPRDGKFIELVGTYNPLATRSGVKback to top mRNA from alignment at L-elsbetiae_contig9981:1446..3982- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9981.18906.1 ID=mRNA_L-elsbetiae_contig9981.18906.1|Name=mRNA_L-elsbetiae_contig9981.18906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2537bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:1446..3982- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9981:1446..3982- >mRNA_L-elsbetiae_contig9981.18906.1 ID=mRNA_L-elsbetiae_contig9981.18906.1|Name=mRNA_L-elsbetiae_contig9981.18906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1674bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:1446..3982- (Laminarionema elsbetiae ELsaHSoW15)back to top |