Homology
BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Match:
D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)
HSP 1 Score: 65.1 bits (157), Expect = 4.360e-10
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 4 DVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALG 126
DVRWESL+AEGAGGAI+AQDG VTL GLH F CSS LG
Sbjct: 198 DVRWESLSAEGAGGAIYAQDGGTVTLKGLHHFHNCSSGTLG 238
BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Match:
A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)
HSP 1 Score: 62.4 bits (150), Expect = 3.840e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 4 DVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALG 126
DVRW+SL+ EGAGGAI+AQDG VTL GLH F CSS LG
Sbjct: 201 DVRWDSLSVEGAGGAIYAQDGGTVTLKGLHHFHNCSSGTLG 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.36e-10 / Id = 75.61 Expect = 3.84e-9 / Id = 70.73 Sequence D8LTT7_ECTSI A0A6H5JUJ2_9PHAE
Match Name E-value Identity Description
D8LTT7_ECTSI 4.360e-10 75.61 Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE 3.840e-9 70.73 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 307
Cds size 306
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817056.1123455-CDS-L-elsbetiae_contig9981:5151..5457 1622817056.1123455-CDS-L-elsbetiae_contig9981:5151..5457 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9981 5152..5457 +
1691684013.91371-CDS-L-elsbetiae_contig9981:5151..5457 1691684013.91371-CDS-L-elsbetiae_contig9981:5151..5457 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9981 5152..5457 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9981.18907.1
>prot_L-elsbetiae_contig9981.18907.1 ID=prot_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
EDVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALGGGALFVQN ASCAFGDGAQVFFEGCSAADDGGGIELSASNLSLPSGSRARFRGCGAGDK GG back to top mRNA from alignment at L-elsbetiae_contig9981:5152..5457+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9981.18907.1 ID=mRNA_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:5152..5457+ (Laminarionema elsbetiae ELsaHSoW15)GAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGGTGCCAT
CTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACCTCTTCC
AGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTCCAGAAC
GCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGGCTGCTC
GGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACCTGTCCC
TGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGGGACAAG
GGCGGG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9981:5152..5457+
>mRNA_L-elsbetiae_contig9981.18907.1 ID=mRNA_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:5152..5457+ (Laminarionema elsbetiae ELsaHSoW15) GAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGGTGCCAT CTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACCTCTTCC AGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTCCAGAAC GCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGGCTGCTC GGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACCTGTCCC TGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGGGACAAG GGCGGGGAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGG TGCCATCTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACC TCTTCCAGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTC CAGAACGCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGG CTGCTCGGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACC TGTCCCTGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGG GACAAGGGCGGG back to top