mRNA_L-elsbetiae_contig9981.18907.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9981.18907.1
Unique NamemRNA_L-elsbetiae_contig9981.18907.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.360e-10
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 DVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALG 126
            DVRWESL+AEGAGGAI+AQDG  VTL GLH F  CSS  LG
Sbjct:  198 DVRWESLSAEGAGGAIYAQDGGTVTLKGLHHFHNCSSGTLG 238
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BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.840e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 DVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALG 126
            DVRW+SL+ EGAGGAI+AQDG  VTL GLH F  CSS  LG
Sbjct:  201 DVRWDSLSVEGAGGAIYAQDGGTVTLKGLHHFHNCSSGTLG 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9981.18907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT7_ECTSI4.360e-1075.61Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE3.840e-970.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9981contigL-elsbetiae_contig9981:5152..5457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817056.1123455-CDS-L-elsbetiae_contig9981:5151..54571622817056.1123455-CDS-L-elsbetiae_contig9981:5151..5457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9981 5152..5457 +
1691684013.91371-CDS-L-elsbetiae_contig9981:5151..54571691684013.91371-CDS-L-elsbetiae_contig9981:5151..5457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9981 5152..5457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9981.18907.1prot_L-elsbetiae_contig9981.18907.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9981 5152..5457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9981.18907.1

>prot_L-elsbetiae_contig9981.18907.1 ID=prot_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
EDVRWESLAAEGAGGAIFAQDGTNVTLTGLHLFQGCSSSALGGGALFVQN
ASCAFGDGAQVFFEGCSAADDGGGIELSASNLSLPSGSRARFRGCGAGDK
GG
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mRNA from alignment at L-elsbetiae_contig9981:5152..5457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9981.18907.1 ID=mRNA_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:5152..5457+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGGTGCCAT
CTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACCTCTTCC
AGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTCCAGAAC
GCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGGCTGCTC
GGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACCTGTCCC
TGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGGGACAAG
GGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9981:5152..5457+

>mRNA_L-elsbetiae_contig9981.18907.1 ID=mRNA_L-elsbetiae_contig9981.18907.1|Name=mRNA_L-elsbetiae_contig9981.18907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig9981:5152..5457+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGGTGCCAT
CTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACCTCTTCC
AGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTCCAGAAC
GCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGGCTGCTC
GGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACCTGTCCC
TGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGGGACAAG
GGCGGGGAAGACGTCCGATGGGAGTCGCTCGCGGCAGAGGGCGCCGGCGG
TGCCATCTTCGCTCAGGACGGGACAAACGTCACCCTCACGGGCCTTCACC
TCTTCCAGGGCTGCTCGTCCTCGGCCCTGGGGGGCGGGGCGCTCTTCGTC
CAGAACGCCTCCTGCGCCTTCGGTGACGGCGCGCAGGTGTTCTTCGAGGG
CTGCTCGGCGGCGGACGACGGCGGCGGTATCGAGCTCTCCGCCTCCAACC
TGTCCCTGCCGAGCGGTAGCCGGGCCCGGTTCCGAGGGTGCGGCGCGGGG
GACAAGGGCGGG
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