mRNA_L-elsbetiae_contig9941.18871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9941.18871.1
Unique NamemRNA_L-elsbetiae_contig9941.18871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: D7G3K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.380e-59
Identity = 113/203 (55.67%), Postives = 133/203 (65.52%), Query Frame = 1 
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVC-------EACARARAGHLPLRASCSENMKRGPSTVAAGNTAMDDGSGRGKGGLRE-LEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA 585
            +D +VRGLAISDR+PLR PGP WE   FSYLQEMGCP DF          G G G  SS+ VLRG+SWLV+EAVACDF+DNGK Y A+AR++        +A   AR G      S      +   T++    AMD G G      RE L GF AGV+TGD ACDSVATVLRML+LSDLR LQD+VNG+IALAQS+R EQ+ A
Sbjct:   34 EDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDF-------KATGGGGGEPSSAAVLRGVSWLVTEAVACDFDDNGKEYKAAARELLANPRCSPQAVGGARGGSSSDHGSVQPEPAQ--PTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQKTA 227
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BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: A0A6H5L7S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.930e-58
Identity = 112/202 (55.45%), Postives = 136/202 (67.33%), Query Frame = 1 
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEACAR----ARAGHLPLRASCSENMKRGPS--TVAAGNTAMDDGSGRGKGGLRE-LEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA 585
            +D ++RGL ISDR+PLR PGP WE AFFSYLQEMGCP DF          G G G  S + VLRG+SWLV+EAVA DFEDNGK Y A+AR++  A  R    A  G     +S   +++  P+  T++    AMD GSG      RE L GF AGV+TGD ACDSVATVLRML+LSDLR LQ++VNG+I LAQS+R EQ+ A
Sbjct:   47 EDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDF-------KATGGGGGEPSGAAVLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQKTA 241
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BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: A0A7S1C4J5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.660e-11
Identity = 61/217 (28.11%), Postives = 93/217 (42.86%), Query Frame = 1 
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYL--QEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEA------------------CARARAGHLPLRASCSENMK-RGPSTVAAGNT---------AMDDGSGRGKGGLRELEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQS 561
            +D +VR L +  R PLR  GP W  AF SY+    + CP   A   E + G  D A       +   + WL+  A+  ++ED  +   A+A +V                      A  RA   P+ A     +  R P+ +              A++   G G+     ++G + G+ TGDAA D    V R+L++SDLR LQD VN ++   Q+
Sbjct:   38 EDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRA------TLGACVMWLIGHAIGVEYEDVAEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVRAALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3K0_ECTSI2.380e-5955.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S2_9PHAE5.930e-5855.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1C4J5_9STRA4.660e-1128.11Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9941contigL-elsbetiae_contig9941:1379..2642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue7.1e-48
Seed eggNOG ortholog2880.D7G3K0
Preferred nameC14orf166
KEGG rclassRC00002
KEGG koko:K15433,ko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II complex binding
EggNOG OGsKOG4380@1,KOG4380@2759
EC2.7.4.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036
Ec32 ortholog descriptionProtein of unknown function UPF0568
Ec32 orthologEc-19_004940.1
Exons2
Model size588
Cds size588
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817052.946159-CDS-L-elsbetiae_contig9941:1378..17291622817052.946159-CDS-L-elsbetiae_contig9941:1378..1729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9941 1379..1729 +
1691684011.5902212-CDS-L-elsbetiae_contig9941:1378..17291691684011.5902212-CDS-L-elsbetiae_contig9941:1378..1729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9941 1379..1729 +
1622817052.9591022-CDS-L-elsbetiae_contig9941:2405..26421622817052.9591022-CDS-L-elsbetiae_contig9941:2405..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9941 2406..2642 +
1691684011.6067462-CDS-L-elsbetiae_contig9941:2405..26421691684011.6067462-CDS-L-elsbetiae_contig9941:2405..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9941 2406..2642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9941.18871.1prot_L-elsbetiae_contig9941.18871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9941 1379..2642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9941.18871.1

>prot_L-elsbetiae_contig9941.18871.1 ID=prot_L-elsbetiae_contig9941.18871.1|Name=mRNA_L-elsbetiae_contig9941.18871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGA
GDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEACARAR
AGHLPLRASCSENMKRGPSTVAAGNTAMDDGSGRGKGGLRELEGFAAGVD
TGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA*
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mRNA from alignment at L-elsbetiae_contig9941:1379..2642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9941.18871.1 ID=mRNA_L-elsbetiae_contig9941.18871.1|Name=mRNA_L-elsbetiae_contig9941.18871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1264bp|location=Sequence derived from alignment at L-elsbetiae_contig9941:1379..2642+ (Laminarionema elsbetiae ELsaHSoW15)
GATGACCTACAGGTCCGAGGTCTCGCCATCTCCGACCGGGACCCCCTGCG
CCACCCCGGCCCAGACTGGGAGGCGGCGTTTTTCAGCTACCTGCAAGAGA
TGGGCTGCCCGTACGACTTCGCGCCGGGCGAGGAAGGAAGTAGCGGGGCG
GGAGACGGGGCAGGAGCGAGGAGTAGTAGCGTGGTCTTGAGGGGGCTGTC
GTGGCTGGTCAGCGAGGCCGTCGCCTGCGACTTCGAGGACAACGGAAAGG
GCTACATGGCGTCTGCGAGACAGGTTTGTGAAGCGTGCGCGCGTGCCCGC
GCCGGCCACCTGCCTCTCCGAGCATCTTGCTCTGAAAATATGAAAAGAGG
CGTCTGTAAATATGTATCGGCTGTCAAGATCAAGATATGTAGCACGCGCA
CACCCTTCCTGCTAGGTACGCAGTACCGGACTTGTACACGTTGTGGGTAT
CTCCTAGCCATGCTGAATAGCTCGGCATACACGAAAGGGGGTTGTTTCCT
TGTGAACGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG
GGGGGGGCGAAGCAGACAAAAAAGGTTATAAAGCCCCCGGGATCAGGTGT
TGGGTGGCGGACCAACCCCCCCCCCATAGGGNNNNNNNGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
CTTCGGGAAGGAATGTATGAGGCCGAAACAGCTACCAGTATGTATATAGC
CTACGGCATTGAGTATTTGGCGCCGAAATCTAGCCTGCCCTATGTGGAAT
CAACCGGTCTCACGACGCAATCCACACCCTCCGACCGCCTGCCTGCGGAT
TTGACAATCGCGCCGTGCGCCTGCGTGGGCCCCTCTCCCTCCTCAACACA
ACGCTCAAACACACCGGCAGTTGTTGTCGAAGAACCCTTCAACAGCCGAG
AATGGGCTGTCAGAATCAATGCAGCAGCCCAGCACTGTTGCTGCCGGCAA
TACCGCCATGGACGACGGCTCTGGCAGAGGAAAGGGGGGGCTCCGTGAGC
TGGAGGGGTTCGCGGCCGGAGTCGATACGGGGGATGCGGCGTGCGACAGC
GTGGCGACCGTCCTTCGGATGCTGTTTTTGTCGGACTTACGAGGCCTGCA
GGACGACGTCAACGGCATCATTGCCTTGGCGCAATCCAGCAGAACAGAAC
AGAGAAACGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9941:1379..2642+

>mRNA_L-elsbetiae_contig9941.18871.1 ID=mRNA_L-elsbetiae_contig9941.18871.1|Name=mRNA_L-elsbetiae_contig9941.18871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig9941:1379..2642+ (Laminarionema elsbetiae ELsaHSoW15)
GATGACCTACAGGTCCGAGGTCTCGCCATCTCCGACCGGGACCCCCTGCG
CCACCCCGGCCCAGACTGGGAGGCGGCGTTTTTCAGCTACCTGCAAGAGA
TGGGCTGCCCGTACGACTTCGCGCCGGGCGAGGAAGGAAGTAGCGGGGCG
GGAGACGGGGCAGGAGCGAGGAGTAGTAGCGTGGTCTTGAGGGGGCTGTC
GTGGCTGGTCAGCGAGGCCGTCGCCTGCGACTTCGAGGACAACGGAAAGG
GCTACATGGCGTCTGCGAGACAGGTTTGTGAAGCGTGCGCGCGTGCCCGC
GCCGGCCACCTGCCTCTCCGAGCATCTTGCTCTGAAAATATGAAAAGAGG
CGATGACCTACAGGTCCGAGGTCTCGCCATCTCCGACCGGGACCCCCTGC
GCCACCCCGGCCCAGACTGGGAGGCGGCGTTTTTCAGCTACCTGCAAGAG
ATGGGCTGCCCGTACGACTTCGCGCCGGGCGAGGAAGGAAGTAGCGGGGC
GGGAGACGGGGCAGGAGCGAGGAGTAGTAGCGTGGTCTTGAGGGGGCTGT
CGTGGCTGGTCAGCGAGGCCGTCGCCTGCGACTTCGAGGACAACGGAAAG
GGCTACATGGCGTCTGCGAGACAGGTTTGTGAAGCGTGCGCGCGTGCCCG
CGCCGGCCACCTGCCTCTCCGAGCATCTTGCTCTGAAAATATGAAAAGAG
GCCCCAGCACTGTTGCTGCCGGCAATACCGCCATGGACGACGGCTCTGGC
AGAGGAAAGGGGGGGCTCCGTGAGCTGGAGGGGTTCGCGGCCGGAGTCGA
TACGGGGGATGCGGCGTGCGACAGCGTGGCGACCGTCCTTCGGATGCTGT
TTTTGTCGGACTTACGAGGCCTGCAGGACGACGTCAACGGCATCATTGCC
TTGGCGCAATCCAGCAGAACAGAACAGAGAAACGCTTGACCCAGCACTGT
TGCTGCCGGCAATACCGCCATGGACGACGGCTCTGGCAGAGGAAAGGGGG
GGCTCCGTGAGCTGGAGGGGTTCGCGGCCGGAGTCGATACGGGGGATGCG
GCGTGCGACAGCGTGGCGACCGTCCTTCGGATGCTGTTTTTGTCGGACTT
ACGAGGCCTGCAGGACGACGTCAACGGCATCATTGCCTTGGCGCAATCCA
GCAGAACAGAACAGAGAAACGCTTGA
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