prot_L-elsbetiae_contig9941.18871.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9941.18871.1
Unique Nameprot_L-elsbetiae_contig9941.18871.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length196
Homology
BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: D7G3K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.380e-59
Identity = 113/203 (55.67%), Postives = 133/203 (65.52%), Query Frame = 0
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVC-------EACARARAGHLPLRASCSENMKRGPSTVAAGNTAMDDGSGRGKGGLRE-LEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA 195
            +D +VRGLAISDR+PLR PGP WE   FSYLQEMGCP DF          G G G  SS+ VLRG+SWLV+EAVACDF+DNGK Y A+AR++        +A   AR G      S      +   T++    AMD G G      RE L GF AGV+TGD ACDSVATVLRML+LSDLR LQD+VNG+IALAQS+R EQ+ A
Sbjct:   34 EDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDF-------KATGGGGGEPSSAAVLRGVSWLVTEAVACDFDDNGKEYKAAARELLANPRCSPQAVGGARGGSSSDHGSVQPEPAQ--PTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQKTA 227          
BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: A0A6H5L7S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.930e-58
Identity = 112/202 (55.45%), Postives = 136/202 (67.33%), Query Frame = 0
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEACAR----ARAGHLPLRASCSENMKRGPS--TVAAGNTAMDDGSGRGKGGLRE-LEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA 195
            +D ++RGL ISDR+PLR PGP WE AFFSYLQEMGCP DF          G G G  S + VLRG+SWLV+EAVA DFEDNGK Y A+AR++  A  R    A  G     +S   +++  P+  T++    AMD GSG      RE L GF AGV+TGD ACDSVATVLRML+LSDLR LQ++VNG+I LAQS+R EQ+ A
Sbjct:   47 EDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDF-------KATGGGGGEPSGAAVLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQKTA 241          
BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Match: A0A7S1C4J5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.660e-11
Identity = 61/217 (28.11%), Postives = 93/217 (42.86%), Query Frame = 0
Query:    1 DDLQVRGLAISDRDPLRHPGPDWEAAFFSYL--QEMGCPYDFAPGEEGSSGAGDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEA------------------CARARAGHLPLRASCSENMK-RGPSTVAAGNT---------AMDDGSGRGKGGLRELEGFAAGVDTGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQS 187
            +D +VR L +  R PLR  GP W  AF SY+    + CP   A   E + G  D A       +   + WL+  A+  ++ED  +   A+A +V                      A  RA   P+ A     +  R P+ +              A++   G G+     ++G + G+ TGDAA D    V R+L++SDLR LQD VN ++   Q+
Sbjct:   38 EDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRA------TLGACVMWLIGHAIGVEYEDVAEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVRAALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9941.18871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3K0_ECTSI2.380e-5955.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S2_9PHAE5.930e-5855.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1C4J5_9STRA4.660e-1128.11Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019265RNA transcription, translation and transport factor proteinPFAMPF10036RLLcoord: 4..91
e-value: 4.2E-7
score: 30.1
coord: 141..186
e-value: 3.6E-9
score: 36.9
IPR019265RNA transcription, translation and transport factor proteinPANTHERPTHR15924CLEcoord: 137..186
coord: 2..96
NoneNo IPR availablePANTHERPTHR15924:SF9RNA TRANSCRIPTION, TRANSLATION AND TRANSPORT FACTOR PROTEINcoord: 137..186
coord: 2..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9941contigL-elsbetiae_contig9941:1379..2642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9941.18871.1mRNA_L-elsbetiae_contig9941.18871.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9941 1379..2642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9941.18871.1 ID=prot_L-elsbetiae_contig9941.18871.1|Name=mRNA_L-elsbetiae_contig9941.18871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
DDLQVRGLAISDRDPLRHPGPDWEAAFFSYLQEMGCPYDFAPGEEGSSGA
GDGAGARSSSVVLRGLSWLVSEAVACDFEDNGKGYMASARQVCEACARAR
AGHLPLRASCSENMKRGPSTVAAGNTAMDDGSGRGKGGLRELEGFAAGVD
TGDAACDSVATVLRMLFLSDLRGLQDDVNGIIALAQSSRTEQRNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019265RTRAF