mRNA_L-elsbetiae_contig9882.18821.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9882.18821.1
Unique NamemRNA_L-elsbetiae_contig9882.18821.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9882.18821.1 vs. uniprot
Match: D7FKF3_ECTSI (HSCB_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.380e-38
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 MRLLGSTALEEEGADEKTPVPMDFLMEVMETRESLERCSSQDEVEAIAAETSVAINGCLRDMDEALKAGGGKEELSDAAVRLRYMYRIEKEA 276
            MRLLGSTALEEEG D++T VPMDFLMEVMETRE+LE CSS++E EAI +ETSVA+  CL  MDE LKAGGGK+ELSDAAVRLRY+YRIE EA
Sbjct:  207 MRLLGSTALEEEGEDDRTSVPMDFLMEVMETREALEGCSSKEEAEAILSETSVAVEECLSGMDEVLKAGGGKDELSDAAVRLRYLYRIEDEA 298
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9882.18821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKF3_ECTSI2.380e-3878.26HSCB_C domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9882contigL-elsbetiae_contig9882:6491..6769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog2880.D7FKF3
Preferred nameHSCB
KEGG rclassRC00074,RC00514
KEGG koko:K01489,ko:K04082,ko:K15151
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006091,GO:0006790,GO:0008047,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0016226,GO:0022607,GO:0030234,GO:0030544,GO:0031072,GO:0031163,GO:0032781,GO:0042802,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0044571,GO:0045333,GO:0050790,GO:0051087,GO:0051186,GO:0051336,GO:0051345,GO:0055114,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0071840,GO:0098772
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG1076@1,KOG3192@2759
EC3.5.4.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03029,ko03110
Ec32 ortholog descriptionCo-chaperone HscB, C-terminal oligomerisation domain
Ec32 orthologEc-12_002270.1
Exons1
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.2365625-CDS-L-elsbetiae_contig9882:6490..67691622817048.2365625-CDS-L-elsbetiae_contig9882:6490..6769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9882 6491..6769 -
1691684008.1734953-CDS-L-elsbetiae_contig9882:6490..67691691684008.1734953-CDS-L-elsbetiae_contig9882:6490..6769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9882 6491..6769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9882.18821.1prot_L-elsbetiae_contig9882.18821.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9882 6491..6769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9882.18821.1

>prot_L-elsbetiae_contig9882.18821.1 ID=prot_L-elsbetiae_contig9882.18821.1|Name=mRNA_L-elsbetiae_contig9882.18821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MRLLGSTALEEEGADEKTPVPMDFLMEVMETRESLERCSSQDEVEAIAAE
TSVAINGCLRDMDEALKAGGGKEELSDAAVRLRYMYRIEKEAQ
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mRNA from alignment at L-elsbetiae_contig9882:6491..6769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9882.18821.1 ID=mRNA_L-elsbetiae_contig9882.18821.1|Name=mRNA_L-elsbetiae_contig9882.18821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=279bp|location=Sequence derived from alignment at L-elsbetiae_contig9882:6491..6769- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTTGCTGGGATCGACAGCGCTGGAAGAGGAGGGTGCAGACGAAAA
AACACCAGTCCCGATGGACTTCTTGATGGAGGTCATGGAGACGAGGGAGT
CCTTAGAGCGGTGTTCCTCGCAGGATGAGGTGGAGGCGATCGCGGCGGAA
ACAAGCGTGGCCATCAACGGTTGCCTGCGCGACATGGACGAAGCGTTGAA
GGCCGGGGGCGGAAAAGAGGAGCTCTCCGATGCCGCGGTGCGGCTTAGAT
ACATGTATCGCATCGAGAAAGAGGCACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9882:6491..6769-

>mRNA_L-elsbetiae_contig9882.18821.1 ID=mRNA_L-elsbetiae_contig9882.18821.1|Name=mRNA_L-elsbetiae_contig9882.18821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig9882:6491..6769- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTTGCTGGGATCGACAGCGCTGGAAGAGGAGGGTGCAGACGAAAA
AACACCAGTCCCGATGGACTTCTTGATGGAGGTCATGGAGACGAGGGAGT
CCTTAGAGCGGTGTTCCTCGCAGGATGAGGTGGAGGCGATCGCGGCGGAA
ACAAGCGTGGCCATCAACGGTTGCCTGCGCGACATGGACGAAGCGTTGAA
GGCCGGGGGCGGAAAAGAGGAGCTCTCCGATGCCGCGGTGCGGCTTAGAT
ACATGTATCGCATCGAGAAAGAGGCACAAATGCGTTTGCTGGGATCGACA
GCGCTGGAAGAGGAGGGTGCAGACGAAAAAACACCAGTCCCGATGGACTT
CTTGATGGAGGTCATGGAGACGAGGGAGTCCTTAGAGCGGTGTTCCTCGC
AGGATGAGGTGGAGGCGATCGCGGCGGAAACAAGCGTGGCCATCAACGGT
TGCCTGCGCGACATGGACGAAGCGTTGAAGGCCGGGGGCGGAAAAGAGGA
GCTCTCCGATGCCGCGGTGCGGCTTAGATACATGTATCGCATCGAGAAAG
AGGCACAA
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