prot_L-elsbetiae_contig9882.18821.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9882.18821.1
Unique Nameprot_L-elsbetiae_contig9882.18821.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length93
Homology
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BLAST of mRNA_L-elsbetiae_contig9882.18821.1 vs. uniprot
Match: D7FKF3_ECTSI (HSCB_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.380e-38
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0 
Query:    1 MRLLGSTALEEEGADEKTPVPMDFLMEVMETRESLERCSSQDEVEAIAAETSVAINGCLRDMDEALKAGGGKEELSDAAVRLRYMYRIEKEA 92
            MRLLGSTALEEEG D++T VPMDFLMEVMETRE+LE CSS++E EAI +ETSVA+  CL  MDE LKAGGGK+ELSDAAVRLRY+YRIE EA
Sbjct:  207 MRLLGSTALEEEGEDDRTSVPMDFLMEVMETREALEGCSSKEEAEAILSETSVAVEECLSGMDEVLKAGGGKDELSDAAVRLRYLYRIEDEA 298
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9882.18821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKF3_ECTSI2.380e-3878.26HSCB_C domain-containing protein n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..93
IPR009073Co-chaperone HscB, C-terminal oligomerisation domainPFAMPF07743HSCB_Ccoord: 21..92
e-value: 8.7E-17
score: 61.4
IPR036386HscB, C-terminal domain superfamilyGENE3D1.20.1280.20coord: 14..93
e-value: 4.9E-17
score: 63.8
IPR036386HscB, C-terminal domain superfamilySUPERFAMILY47144HSC20 (HSCB), C-terminal oligomerisation domaincoord: 14..92
IPR004640Co-chaperone Hsc20PANTHERPTHR14021FAMILY NOT NAMEDcoord: 12..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9882contigL-elsbetiae_contig9882:6491..6769 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9882.18821.1mRNA_L-elsbetiae_contig9882.18821.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9882 6491..6769 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9882.18821.1 ID=prot_L-elsbetiae_contig9882.18821.1|Name=mRNA_L-elsbetiae_contig9882.18821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MRLLGSTALEEEGADEKTPVPMDFLMEVMETRESLERCSSQDEVEAIAAE
TSVAINGCLRDMDEALKAGGGKEELSDAAVRLRYMYRIEKEAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009073HscB_oligo_C
IPR036386HscB_C_sf
IPR004640HscB