mRNA_L-elsbetiae_contig9881.18819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9881.18819.1
Unique NamemRNA_L-elsbetiae_contig9881.18819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   34 ITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWIVDASHNRLVSL 183
            +TRLVGL ACP +TSLD+S+NALTEL+SAC EGCKELWIVDASHNRL SL
Sbjct:    1 MTRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESL 50
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BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.490e-18
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   34 ITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWIVDASHNRLVSL 183
            +TRLVGL ACP++TSLD+S+NALTEL+SAC E CKELWIVDASHNRL SL
Sbjct:    1 MTRLVGLDACPSVTSLDVSWNALTELDSACLEECKELWIVDASHNRLESL 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9X4_9PHAE1.680e-1982.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU7_ECTSI1.490e-1880.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9881contigL-elsbetiae_contig9881:685..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.1435244-CDS-L-elsbetiae_contig9881:684..8851622817048.1435244-CDS-L-elsbetiae_contig9881:684..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9881 685..885 -
1691684008.107335-CDS-L-elsbetiae_contig9881:684..8851691684008.107335-CDS-L-elsbetiae_contig9881:684..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9881 685..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9881.18819.1prot_L-elsbetiae_contig9881.18819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9881 685..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9881.18819.1

>prot_L-elsbetiae_contig9881.18819.1 ID=prot_L-elsbetiae_contig9881.18819.1|Name=mRNA_L-elsbetiae_contig9881.18819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
NVQSVQLRGRGITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWI
VDASHNRLVSLLDLASL
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mRNA from alignment at L-elsbetiae_contig9881:685..885-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9881.18819.1 ID=mRNA_L-elsbetiae_contig9881.18819.1|Name=mRNA_L-elsbetiae_contig9881.18819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig9881:685..885- (Laminarionema elsbetiae ELsaHSoW15)
AACGTGCAGTCGGTGCAGCTTCGAGGGCGAGGAATAACGCGCCTAGTCGG
ACTGAGTGCATGCCCCAACCTCACTTCCTTGGATATTTCCTACAACGCGT
TGACAGAGCTAGAGTCGGCGTGCTTCGAAGGATGCAAGGAACTGTGGATA
GTGGATGCTTCTCATAATCGGCTCGTGAGTCTCCTCGATTTAGCCTCTCT
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9881:685..885-

>mRNA_L-elsbetiae_contig9881.18819.1 ID=mRNA_L-elsbetiae_contig9881.18819.1|Name=mRNA_L-elsbetiae_contig9881.18819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig9881:685..885- (Laminarionema elsbetiae ELsaHSoW15)
AACGTGCAGTCGGTGCAGCTTCGAGGGCGAGGAATAACGCGCCTAGTCGG
ACTGAGTGCATGCCCCAACCTCACTTCCTTGGATATTTCCTACAACGCGT
TGACAGAGCTAGAGTCGGCGTGCTTCGAAGGATGCAAGGAACTGTGGATA
GTGGATGCTTCTCATAATCGGCTCGTGAGTCTCCTCGATTTAGCCTCTCT
CAACGTGCAGTCGGTGCAGCTTCGAGGGCGAGGAATAACGCGCCTAGTCG
GACTGAGTGCATGCCCCAACCTCACTTCCTTGGATATTTCCTACAACGCG
TTGACAGAGCTAGAGTCGGCGTGCTTCGAAGGATGCAAGGAACTGTGGAT
AGTGGATGCTTCTCATAATCGGCTCGTGAGTCTCCTCGATTTAGCCTCTC
TC
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