prot_L-elsbetiae_contig9881.18819.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9881.18819.1
Unique Nameprot_L-elsbetiae_contig9881.18819.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length67
Homology
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BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   12 ITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWIVDASHNRLVSL 61
            +TRLVGL ACP +TSLD+S+NALTEL+SAC EGCKELWIVDASHNRL SL
Sbjct:    1 MTRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESL 50
[Close]
BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.490e-18
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   12 ITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWIVDASHNRLVSL 61
            +TRLVGL ACP++TSLD+S+NALTEL+SAC E CKELWIVDASHNRL SL
Sbjct:    1 MTRLVGLDACPSVTSLDVSWNALTELDSACLEECKELWIVDASHNRLESL 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9881.18819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9X4_9PHAE1.680e-1982.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU7_ECTSI1.490e-1880.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 20..58
e-value: 1.5E-8
score: 34.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 47..67
score: 6.033
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 23..44
score: 7.142
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..67
e-value: 7.4E-13
score: 49.8
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9881contigL-elsbetiae_contig9881:685..885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9881.18819.1mRNA_L-elsbetiae_contig9881.18819.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9881 685..885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9881.18819.1 ID=prot_L-elsbetiae_contig9881.18819.1|Name=mRNA_L-elsbetiae_contig9881.18819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
NVQSVQLRGRGITRLVGLSACPNLTSLDISYNALTELESACFEGCKELWI
VDASHNRLVSLLDLASL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf