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Homology
BLAST of mRNA_L-elsbetiae_contig9877.18814.1 vs. uniprot
Match: D8LEN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEN3_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 2.360e-17 Identity = 78/174 (44.83%), Postives = 82/174 (47.13%), Query Frame = -3
Query: 9 RTQPISPSGIRAILKGFSVLPWQFRDPPRDGTSWNFPSRTKPAVGGGATSTTAAAANPGEPALAPAAXXXXXXXXXXXEGVRGHDGSVGADGSTSGTNGGESALAAEGGXXXXXXXXSAPSP------SRLRGFLGTRWRAGVGNPGSPPRIVRSRSMNVVSDIEEGKGGWPLR 512
R PISPSGIRAILKGFSVLPWQFR+P RDG WNF S T G A T A AA AA EG G GS S G SA S PSP S R + A V N G+P R+VRS SM VVSDIEEGKG W R
Sbjct: 140 RALPISPSGIRAILKGFSVLPWQFREPSRDGNRWNFSSGT---AGASAEPTAAGAAG--------AAATGDHAQTAVAEGRNG--------GSASEAGGVASA--------------SPPSPVLSTSASAQRSSPRSGLMANVENLGTP-RLVRSNSMTVVSDIEEGKGRWLRR 279
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 970 |
Cds size | 714 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817047.4756024-UTR-L-elsbetiae_contig9877:1093..1132 | 1622817047.4756024-UTR-L-elsbetiae_contig9877:1093..1132 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9877 1094..1132 + |
1691684007.5247638-UTR-L-elsbetiae_contig9877:1093..1132 | 1691684007.5247638-UTR-L-elsbetiae_contig9877:1093..1132 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9877 1094..1132 + |
1622817047.5043972-UTR-L-elsbetiae_contig9877:1846..2063 | 1622817047.5043972-UTR-L-elsbetiae_contig9877:1846..2063 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9877 1847..2063 + |
1691684007.5492413-UTR-L-elsbetiae_contig9877:1846..2063 | 1691684007.5492413-UTR-L-elsbetiae_contig9877:1846..2063 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9877 1847..2063 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817047.4899337-CDS-L-elsbetiae_contig9877:1132..1846 | 1622817047.4899337-CDS-L-elsbetiae_contig9877:1132..1846 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9877 1133..1846 + |
1691684007.5379858-CDS-L-elsbetiae_contig9877:1132..1846 | 1691684007.5379858-CDS-L-elsbetiae_contig9877:1132..1846 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9877 1133..1846 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9877.18814.1 >prot_L-elsbetiae_contig9877.18814.1 ID=prot_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MSLTTFMERLRTIRGGLPGFPTPALHLVPRKPLSREGEGADAPAAAAPPP PSAANALSPPFVPLVLPSAPTDPSCPRTPSPAAAAAATAPAAAGANAGSP GLAAAAVVLVAPPPTAGLVRLGKFHEVPSRGGSLNCHGSTENPLRMARIP EGDIGWVLCRLPLPLPLLLLLLLPAAVPFLLLWSPLTSLPSRAPRPRLCC VHSDVAVVVAEEVLAGDVFNDNAAGGTGYPSGMYAAS* back to topmRNA from alignment at L-elsbetiae_contig9877:1094..2063+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig9877.18814.1 ID=mRNA_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=970bp|location=Sequence derived from alignment at L-elsbetiae_contig9877:1094..2063+ (Laminarionema elsbetiae ELsaHSoW15) CCCGCCCATCGTAGCGGCCAGCCTCCCTTCCCCTCTTCGATGTCGCTGAC
CACATTCATGGAGCGGCTGCGAACAATCCGCGGCGGGCTGCCCGGGTTTC
CGACGCCCGCTCTCCACCTGGTGCCCAGAAAGCCCCTCAGCCGAGAGGGG
GAGGGGGCGGACGCGCCGGCTGCTGCTGCGCCCCCTCCGCCTTCCGCCGC
CAATGCACTTTCGCCGCCGTTCGTCCCGCTGGTGCTGCCGTCAGCACCAA
CAGATCCATCGTGCCCCCGCACCCCCTCCCCGGCCGCCGCGGCCGCCGCC
ACCGCCCCGGCGGCTGCAGGTGCCAACGCGGGCTCTCCGGGATTGGCGGC
GGCGGCGGTGGTGCTTGTGGCGCCACCACCAACGGCAGGTTTAGTACGGC
TGGGGAAGTTCCACGAGGTTCCGTCTCGCGGCGGGTCTCTGAACTGCCAT
GGCAGCACTGAGAACCCTTTGAGGATGGCTCGGATTCCGGAAGGGGATAT
CGGCTGGGTTCTGTGTCGGCTTCCCTTGCCGCTGCCGCTGCTGCTGCTGC
TGTTGCTGCCGGCTGCGGTCCCGTTTCTTCTCCTCTGGTCTCCGCTGACA
TCGCTGCCGTCGCGGGCGCCACGGCCTCGGCTCTGCTGCGTCCATTCGGA
TGTCGCCGTGGTGGTAGCAGAAGAGGTCCTCGCCGGGGACGTCTTCAATG
ATAACGCCGCCGGTGGTACTGGGTACCCTTCGGGGATGTACGCGGCGTCA
TGACAGCAGCAGCTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGCTTCC
GCTGTATCCATCTGCTCTCGTCCTTTCGCGCCCTGTAGCTGCCTCATCGG
CGATGACTCCTCCGTGTGCGAGGATGACTGGCTCGAGATCGGCCACCGCT
GTCGCGGCGGCATCACAGCAGGCGGCGCTGAAAACACCAGCAGCGACGCC
GCTGTGCCCGCCTCCCTCTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig9877:1094..2063+ >mRNA_L-elsbetiae_contig9877.18814.1 ID=mRNA_L-elsbetiae_contig9877.18814.1|Name=mRNA_L-elsbetiae_contig9877.18814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig9877:1094..2063+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCGCTGACCACATTCATGGAGCGGCTGCGAACAATCCGCGGCGGGCT GCCCGGGTTTCCGACGCCCGCTCTCCACCTGGTGCCCAGAAAGCCCCTCA GCCGAGAGGGGGAGGGGGCGGACGCGCCGGCTGCTGCTGCGCCCCCTCCG CCTTCCGCCGCCAATGCACTTTCGCCGCCGTTCGTCCCGCTGGTGCTGCC GTCAGCACCAACAGATCCATCGTGCCCCCGCACCCCCTCCCCGGCCGCCG CGGCCGCCGCCACCGCCCCGGCGGCTGCAGGTGCCAACGCGGGCTCTCCG GGATTGGCGGCGGCGGCGGTGGTGCTTGTGGCGCCACCACCAACGGCAGG TTTAGTACGGCTGGGGAAGTTCCACGAGGTTCCGTCTCGCGGCGGGTCTC TGAACTGCCATGGCAGCACTGAGAACCCTTTGAGGATGGCTCGGATTCCG GAAGGGGATATCGGCTGGGTTCTGTGTCGGCTTCCCTTGCCGCTGCCGCT GCTGCTGCTGCTGTTGCTGCCGGCTGCGGTCCCGTTTCTTCTCCTCTGGT CTCCGCTGACATCGCTGCCGTCGCGGGCGCCACGGCCTCGGCTCTGCTGC GTCCATTCGGATGTCGCCGTGGTGGTAGCAGAAGAGGTCCTCGCCGGGGA CGTCTTCAATGATAACGCCGCCGGTGGTACTGGGTACCCTTCGGGGATGT ACGCGGCGTCATGAATGTCGCTGACCACATTCATGGAGCGGCTGCGAACA ATCCGCGGCGGGCTGCCCGGGTTTCCGACGCCCGCTCTCCACCTGGTGCC CAGAAAGCCCCTCAGCCGAGAGGGGGAGGGGGCGGACGCGCCGGCTGCTG CTGCGCCCCCTCCGCCTTCCGCCGCCAATGCACTTTCGCCGCCGTTCGTC CCGCTGGTGCTGCCGTCAGCACCAACAGATCCATCGTGCCCCCGCACCCC CTCCCCGGCCGCCGCGGCCGCCGCCACCGCCCCGGCGGCTGCAGGTGCCA ACGCGGGCTCTCCGGGATTGGCGGCGGCGGCGGTGGTGCTTGTGGCGCCA CCACCAACGGCAGGTTTAGTACGGCTGGGGAAGTTCCACGAGGTTCCGTC TCGCGGCGGGTCTCTGAACTGCCATGGCAGCACTGAGAACCCTTTGAGGA TGGCTCGGATTCCGGAAGGGGATATCGGCTGGGTTCTGTGTCGGCTTCCC TTGCCGCTGCCGCTGCTGCTGCTGCTGTTGCTGCCGGCTGCGGTCCCGTT TCTTCTCCTCTGGTCTCCGCTGACATCGCTGCCGTCGCGGGCGCCACGGC CTCGGCTCTGCTGCGTCCATTCGGATGTCGCCGTGGTGGTAGCAGAAGAG GTCCTCGCCGGGGACGTCTTCAATGATAACGCCGCCGGTGGTACTGGGTA CCCTTCGGGGATGTACGCGGCGTCATGA back to top
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